| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,778,086 – 12,778,177 |
| Length | 91 |
| Max. P | 0.534794 |
| Location | 12,778,086 – 12,778,177 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 93 |
| Reading direction | reverse |
| Mean pairwise identity | 84.58 |
| Mean single sequence MFE | -21.97 |
| Consensus MFE | -15.09 |
| Energy contribution | -16.67 |
| Covariance contribution | 1.58 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.34 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.00 |
| SVM RNA-class probability | 0.534794 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12778086 91 - 23771897 UUCGUUGUUAUUGUUUUCGUUUUGAUGC-GGGGCUUGG-UCGCAUUUGUAAAUAGUACAAUAACAAGCCCCAAAGUUAUUAACAAUGCGCCAU ..((((((((........((......))-((((((((.-......(((((.....)))))...))))))))........))))))))...... ( -24.50) >DroSec_CAF1 20044 86 - 1 UUCGUUGUUAUUGUUUUCGUUUUAAUAC-GGGGCUUGG-UCGCAUUUGUAAAUAGUACAAUAACAAGCCCCAAAGUUAUUAACAAUGU----- ..((((((((........((......))-((((((((.-......(((((.....)))))...))))))))........)))))))).----- ( -24.40) >DroSim_CAF1 19363 91 - 1 UUCGUUGUUAUUGUUUUCGUUUUAAUAC-GGGGCUUGG-UCGCAUUUGUAAAUAGUACAAUAACAAGCCCCAAAGUUAUUAACAAUGCGCCAU ..((((((((........((......))-((((((((.-......(((((.....)))))...))))))))........))))))))...... ( -24.20) >DroEre_CAF1 20110 91 - 1 UUCGUUGUUAUUGUUUUCAUUUUAAUGC-GGGGCUUGG-UCGCAUUUGUUAAUAAUACAAUAACAAGCCCCUAAGUUAUUAACAAUGCGCCAU ..((((((((.((....))...((((..-((((((((.-......((((.......))))...))))))))...)))).))))))))...... ( -21.80) >DroYak_CAF1 18677 91 - 1 UUCGUUGUUAUUGUUUUCAUUUUAAUGC-GGGGCUUGG-UCGCAUUUGUAAAUAAUACAAUAACAAGCCCCAACGUUAUUAACAAUGCGCCAU ..((((((((.((....))...(((((.-((((((((.-......(((((.....)))))...))))))))..))))).))))))))...... ( -23.90) >DroMoj_CAF1 33162 84 - 1 UGCUUUGUUAUUGUU--AAUUUCAGUAUAUGGGCUUGGCUCGAGUUUCUAAAAAUAACAACAACA-------AUAUUAUUAACAAUACGCCAU ....(((((.(((((--(.(((.((.((.(((((...))))).))..)).))).)))))).))))-------).................... ( -13.00) >consensus UUCGUUGUUAUUGUUUUCAUUUUAAUAC_GGGGCUUGG_UCGCAUUUGUAAAUAGUACAAUAACAAGCCCCAAAGUUAUUAACAAUGCGCCAU ..((((((((............((((...((((((((........(((((.....)))))...))))))))...)))).))))))))...... (-15.09 = -16.67 + 1.58)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:21 2006