Locus 4351

Sequence ID 3L_DroMel_CAF1
Location 12,773,167 – 12,773,281
Length 114
Max. P 0.523215
window6736

overview

Window 6

Location 12,773,167 – 12,773,281
Length 114
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 81.42
Mean single sequence MFE -25.52
Consensus MFE -13.70
Energy contribution -15.70
Covariance contribution 2.00
Combinations/Pair 1.00
Mean z-score -1.94
Structure conservation index 0.54
SVM decision value -0.02
SVM RNA-class probability 0.523215
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12773167 114 - 23771897
AACUACACCCAGUAGUUUGUAAGUUUCAAGGGUAUGCCGAUUACUAAUCAAAUUUACAGCUGCACCAUCUGCUGCGUACUAAAAAGACCUUUUAUGUGGCAUAUUCGCUGGUUA
........(((((...(((.......)))((((((((((((.....))).....(((.((.(((.....))).)))))...................))))))))))))))... ( -25.10)
>DroSec_CAF1 15138 106 - 1
AACUACACCCAGUAGUUUGUAAGU-UCAAGGGUAUGCCGAUUACUAAUCAAAUUUACAGCAGCACUAACUGCUGCGUACUGAAAAGACGG-UGGUGUGCAAUAUUUG----U--
((((((.....)))))).......-.((((.((((((((.................((((((......))))))(((.((....))))).-))))))))....))))----.-- ( -26.90)
>DroSim_CAF1 14509 109 - 1
AACUACACCCAGUAGUUUGUAAGUUUCAAGGGUAUGCCGAUUACUAAUCAAAUUUACAGCAGCACUAACUGCUGCGUACUGAAAAGACGA-UGGUGUGCAAUAUUUG----UUA
...(((((((((((...(((((((((....((((.......))))....)))))))))((((((.....)))))).))))).........-.)))))).........----... ( -28.20)
>DroEre_CAF1 13879 113 - 1
AUCUACACCCAGUAAUUUGCAAGUUUCAAGGGUAUUCCGACUAGUAAUCAAAUUUACAGCAGCACUAUCUGCUGCUUACUCAAAAGACUU-CUAUGUACAAUAUUUACUGGUUA
........(((((((..(((((((((...(((((.........((((......))))(((((((.....))))))))))))...))))).-...))))......)))))))... ( -26.80)
>DroYak_CAF1 13865 104 - 1
AUCUACACCCAGUAGUUUGUAUGUUUCAAGGGUAUUUCGACUAGUAAUCAAAUUUACAGCAGCACUAUCUGCUACGUACUCAAAUAUCUU-UU---------AUUUACUGGCUA
........(((((((.....((((((...((((((........((((......))))(((((......)))))..))))))))))))...-..---------..)))))))... ( -20.60)
>consensus
AACUACACCCAGUAGUUUGUAAGUUUCAAGGGUAUGCCGAUUACUAAUCAAAUUUACAGCAGCACUAUCUGCUGCGUACUCAAAAGACGU_UUAUGUGCAAUAUUUGCUGGUUA
((((((.....))))))(((((((((....((((.......))))....)))))))))((((((.....))))))....................................... (-13.70 = -15.70 +   2.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:20 2006