| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,772,350 – 12,772,477 |
| Length | 127 |
| Max. P | 0.981878 |
| Location | 12,772,350 – 12,772,466 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 93.19 |
| Mean single sequence MFE | -27.21 |
| Consensus MFE | -24.56 |
| Energy contribution | -25.24 |
| Covariance contribution | 0.68 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.20 |
| Structure conservation index | 0.90 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.664038 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12772350 116 - 23771897 GGCCAAAGACAUUUUUGCUCAAGGAGAAUGUAAACAUUUGGUAGGCAAAUUUAUGGCCGCAGCUGUAUGCAAAGAUUAUGGGUUUUAGAUAAAGGGAGAUGAACUCCAUGGGAAUA---- (((((.(((....(((((..(....(((((....)))))..)..)))))))).)))))(((......))).....((((((..((((..(......)..))))..)))))).....---- ( -26.70) >DroSec_CAF1 14318 116 - 1 GGCCAAAGACAUUUUUGCUCAAGGAGAAUGUAAACAUUUGGUAGGCAAAUUUAUGGCCGCAGCUGUAUGCAAACAUUAUGGGUUUUAGAUAAAGGGAGAUGAACUCCAUUGGAAUA---- (((((.(((....(((((..(....(((((....)))))..)..)))))))).)))))(((......)))...........(((((((......((((.....)))).))))))).---- ( -25.40) >DroSim_CAF1 13689 116 - 1 GGCCAAAGACAUUUUUGCUCAAGGAGAAUGUAAACAUUUGGUAGGCAAAUUUAUGGCCGCAGCUGUAUGCAAAGAUUAUGGGUUUUAGAAAAAGGCAGAUGAACUCCAUGGGAAUA---- (((((.(((....(((((..(....(((((....)))))..)..)))))))).)))))(((......))).....((((((((((...............)))).)))))).....---- ( -26.46) >DroEre_CAF1 13066 118 - 1 GGCCAAAGACAU--UUGCUCAAGGAGAAUGUAAACAUUUGGAAGGCAAAUUUAUGGCCGCAGCUGUAUGCAAAGAUUAUGGGUUUUAGAUAUAGGGAGAUGAACUCCAUAGACAUGUACU (((((.(((..(--(((((......(((((....)))))....))))))))).)))))(((.((((((.(.(((((.....))))).)))))))((((.....)))).......)))... ( -28.70) >DroYak_CAF1 13047 113 - 1 GGCCAAAGACAU--UUGCUCAAGGAGAAUGUAAACAUUUGGAAGGCAAAUUUAUGGCCGCAGCUGUAUGCAAAAAUUAUGGGU-UUAGAUAUAGGCAGAUGAACUCCAUGGGAAUA---- (((((.(((..(--(((((......(((((....)))))....))))))))).)))))(((......))).....((((((((-(((..(......)..))))).)))))).....---- ( -28.80) >consensus GGCCAAAGACAUUUUUGCUCAAGGAGAAUGUAAACAUUUGGUAGGCAAAUUUAUGGCCGCAGCUGUAUGCAAAGAUUAUGGGUUUUAGAUAAAGGGAGAUGAACUCCAUGGGAAUA____ (((((.(((....((((((......(((((....)))))....))))))))).)))))(((......))).....((((((((((...............)))).))))))......... (-24.56 = -25.24 + 0.68)
| Location | 12,772,386 – 12,772,477 |
|---|---|
| Length | 91 |
| Sequences | 5 |
| Columns | 91 |
| Reading direction | reverse |
| Mean pairwise identity | 97.25 |
| Mean single sequence MFE | -21.44 |
| Consensus MFE | -19.84 |
| Energy contribution | -20.24 |
| Covariance contribution | 0.40 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.74 |
| Structure conservation index | 0.93 |
| SVM decision value | 1.90 |
| SVM RNA-class probability | 0.981878 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12772386 91 - 23771897 UAAUUGAAGCAGGCCAAAGACAUUUUUGCUCAAGGAGAAUGUAAACAUUUGGUAGGCAAAUUUAUGGCCGCAGCUGUAUGCAAAGAUUAUG (((((...((.(((((.(((....(((((..(....(((((....)))))..)..)))))))).))))))).((.....))...))))).. ( -21.40) >DroSec_CAF1 14354 91 - 1 UAAUUGAAGCAGGCCAAAGACAUUUUUGCUCAAGGAGAAUGUAAACAUUUGGUAGGCAAAUUUAUGGCCGCAGCUGUAUGCAAACAUUAUG ........((.(((((.(((....(((((..(....(((((....)))))..)..)))))))).))))))).((.....)).......... ( -20.80) >DroSim_CAF1 13725 91 - 1 UAAUUGAAGCAGGCCAAAGACAUUUUUGCUCAAGGAGAAUGUAAACAUUUGGUAGGCAAAUUUAUGGCCGCAGCUGUAUGCAAAGAUUAUG (((((...((.(((((.(((....(((((..(....(((((....)))))..)..)))))))).))))))).((.....))...))))).. ( -21.40) >DroEre_CAF1 13106 89 - 1 UAAUUGAAGCAGGCCAAAGACAU--UUGCUCAAGGAGAAUGUAAACAUUUGGAAGGCAAAUUUAUGGCCGCAGCUGUAUGCAAAGAUUAUG (((((...((.(((((.(((..(--(((((......(((((....)))))....))))))))).))))))).((.....))...))))).. ( -22.00) >DroYak_CAF1 13082 89 - 1 UAAUUGAAGCAGGCCAAAGACAU--UUGCUCAAGGAGAAUGUAAACAUUUGGAAGGCAAAUUUAUGGCCGCAGCUGUAUGCAAAAAUUAUG (((((...((.(((((.(((..(--(((((......(((((....)))))....))))))))).))))))).((.....))...))))).. ( -21.60) >consensus UAAUUGAAGCAGGCCAAAGACAUUUUUGCUCAAGGAGAAUGUAAACAUUUGGUAGGCAAAUUUAUGGCCGCAGCUGUAUGCAAAGAUUAUG ........((.(((((.(((....((((((......(((((....)))))....))))))))).))))))).((.....)).......... (-19.84 = -20.24 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:19 2006