Locus 4346

Sequence ID 3L_DroMel_CAF1
Location 12,763,672 – 12,763,765
Length 93
Max. P 0.707712
window6727

overview

Window 7

Location 12,763,672 – 12,763,765
Length 93
Sequences 6
Columns 107
Reading direction reverse
Mean pairwise identity 77.24
Mean single sequence MFE -22.06
Consensus MFE -12.64
Energy contribution -13.92
Covariance contribution 1.28
Combinations/Pair 1.27
Mean z-score -1.69
Structure conservation index 0.57
SVM decision value 0.37
SVM RNA-class probability 0.707712
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12763672 93 - 23771897
UUCGCUUCUCUUCGGCGAUUUUAGCGAUUUCACAAAAAGCGAGUGCAGUGAAAUCUUUUGUCAUUUCAAAUUGGCUG-UUUAAUUGCCUAAUGU-------------
.............(((((((.((((((((((((.....((....)).)))))))).((((......))))...))))-...)))))))......------------- ( -22.50)
>DroPse_CAF1 32952 101 - 1
UCGGCUUCUGUGUAGUGCGUUAAGCGGUUUCACAAA-GGCA-----AGUGAAAUCUUUUGUCAUUUCAAUUUUGUGGUUUUAAUUGCCUAAUAUUGCCUGUGUUAUU
..(((...((((.(.(((.....))).)..)))).(-((((-----(.(((((((..(((......)))......))))))).))))))......)))......... ( -24.50)
>DroSec_CAF1 5518 93 - 1
UUCGUUUCUCUUCGGCGAUUUUAGCGAUUUCACAAAAAGCGAGUGGAGUGAAAUCUUUUGUCAUUUCAAUUUGGCUG-UUUAAUUGCCUAAUGU-------------
.............(((((((.((((((((((((..............))))))))..(((......)))....))))-...)))))))......------------- ( -21.34)
>DroEre_CAF1 4330 93 - 1
UUCGCUGCUCUUCGGCGAUUUUAGCGAUUUCACAAAACGCCAGUGCAGUGAAAUCUUUUGUCAUUUCAAUUUGGCUG-UUUAAUUGCCUAAUGU-------------
.............(((((((.((((((((((((...((....))...))))))))..(((......)))....))))-...)))))))......------------- ( -23.90)
>DroYak_CAF1 4237 93 - 1
UUCGCUUCUCUUCGGCGAUUUUAGCGAUUUCACAAAAAGCGAGUGCAGUGAAAUCUUUUGUCAUUUCAAUUUGGCUG-UUUAAUUGCCUAAUGU-------------
.............(((((((.((((((((((((.....((....)).))))))))..(((......)))....))))-...)))))))......------------- ( -21.60)
>DroAna_CAF1 3670 94 - 1
UCCACUCCACUCCACCAGUUUUU--GUUUUCACAAAUGGCGAG-----UGAAAUCUUUUGUCAUUCCAAUUUGGCCA-UUUAAUUGUCUAAUGUAGCCGUGG-----
.((((..(((((..(((...(((--((....)))))))).)))-----))......................(((((-((.........))))..)))))))----- ( -18.50)
>consensus
UUCGCUUCUCUUCGGCGAUUUUAGCGAUUUCACAAAAAGCGAGUGCAGUGAAAUCUUUUGUCAUUUCAAUUUGGCUG_UUUAAUUGCCUAAUGU_____________
.............(((((((.((((((((((((..............))))))))..(((......)))....))))....)))))))................... (-12.64 = -13.92 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:11 2006