Locus 4342

Sequence ID 3L_DroMel_CAF1
Location 12,758,071 – 12,758,191
Length 120
Max. P 0.541133
window6720

overview

Window 0

Location 12,758,071 – 12,758,191
Length 120
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 87.92
Mean single sequence MFE -47.33
Consensus MFE -36.35
Energy contribution -36.10
Covariance contribution -0.25
Combinations/Pair 1.13
Mean z-score -1.42
Structure conservation index 0.77
SVM decision value 0.01
SVM RNA-class probability 0.541133
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12758071 120 - 23771897
GACUAUCCACACAGCCAGCCUUCCACCGCCCACUGUAUGGAGAGCUGAAGUGUGGCGAGGCAGUCGGAGAAUAGCCCGGCAUGGUUGAAACCUCUUGCCUUGGGCAUUUCCAGGGUGCAA
..((..((((((...((((.(((((..((.....)).))))).))))..))))))..))(((.(((((((...((((((((.(((....)))...))))..)))).))))).)).))).. ( -47.10)
>DroSim_CAF1 17320 120 - 1
GAAUAUCCACACCCCCAGCCACCCACCUCCCACUGUAUGGGGAGCUGAAGUGUGGCGACGCAGUCGGAGAAUAGCCUGGCAUGGUUGAAACCUCUUGCCUUGGGCAGUUCCAGGGUGCAA
.........(((((((.((((((((.(((((.(.....)))))).))..).)))))(((...))))).((((.((((((((.(((....)))...))))..)))).))))..)))))... ( -45.90)
>DroEre_CAF1 15257 120 - 1
GAAUGUCGACGCCGCCAGCCUCCCACCGCCCACUGUAUGGGGAGCUGAAGUGCGGCGAGGCAGUCGGACAAUAGCCUGGCAUGGUUGAAAUCGUUUGCGUUGGAAGGUGCCAGGGUGCAA
((.((((..((((((((((..((((..((.....)).))))..))))....)))))).)))).))......((.((((((((..((.((..((....)))).))..)))))))).))... ( -48.30)
>DroYak_CAF1 15472 120 - 1
GAAUGUCCACGCCGCCAGCCUCCCACCGUCCACUGUAUGGGGAGCUGAAGUGUGGCGAGGCAGUCGGACAAUAGCCUGGCAUGGUGGAGACCACAUGCCUUGGACAGUUCCAGGGUGCAA
(((((((((((((((((((..((((............))))..))))....))))))((((.((......)).))))((((((..(....)..)))))).)))))).))).......... ( -48.00)
>consensus
GAAUAUCCACACCGCCAGCCUCCCACCGCCCACUGUAUGGGGAGCUGAAGUGUGGCGAGGCAGUCGGACAAUAGCCUGGCAUGGUUGAAACCUCUUGCCUUGGACAGUUCCAGGGUGCAA
......((((((...((((..((((............))))..))))..))))))....((.(((((........)))))..(((....)))....(((((((......))))))))).. (-36.35 = -36.10 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:20:04 2006