| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,753,826 – 12,753,946 |
| Length | 120 |
| Max. P | 0.609077 |
| Location | 12,753,826 – 12,753,946 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 93.06 |
| Mean single sequence MFE | -28.63 |
| Consensus MFE | -23.47 |
| Energy contribution | -23.37 |
| Covariance contribution | -0.11 |
| Combinations/Pair | 1.06 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.609077 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12753826 120 - 23771897 GAAACCAUCUUGCUUGCAGCAGAAACCAUCUUGCUUGCAGCAGAAACCAUCUUGCUUGCAGCAGCAACCAUCUUGCUUCCAGCAACAGCAACGAAAUUGUGGACGAAAUCCACCCUGUCC .......(((.(((.(((((((........)))).))))))))).....((((((((((.(.(((((.....))))).)..)))..))))).))....(((((.....)))))....... ( -28.70) >DroSec_CAF1 10817 115 - 1 -----CAUCUUGCUUGCAGCAGCAACCAUCUUGCUUGCAGCAGCAACCAUCUUGCUUGCAGCAGCCACAAUCUUGCUUCCAGCAACAGCAACGAAAUUAUGGACGAAAUCCACCCUGUCC -----..((((((((((.(((((((.....)))).))).(((((((.....)))).)))(((((........)))))....)))..))))).))......(((((..........))))) ( -27.80) >DroSim_CAF1 13079 120 - 1 GCAACCAUCUUGCUUGCAACAGCAACCAUCUUGCUUGCAACAGCAACCAUCUUGCUUGCAGCAGCCACAAUCUUGCUUCCAGCAACAGCAACGAAAUUGUGGACGAAAUCCACCCUGUCC ((.......(((((((((..(((((.....)))))))))..))))).....(((((.(.(((((........))))).).)))))..))...((....(((((.....)))))....)). ( -29.40) >consensus G_AACCAUCUUGCUUGCAGCAGCAACCAUCUUGCUUGCAGCAGCAACCAUCUUGCUUGCAGCAGCCACAAUCUUGCUUCCAGCAACAGCAACGAAAUUGUGGACGAAAUCCACCCUGUCC ..........(((..((((...........))))..)))((((......(((((((((((((((........)))))....)))..))))).))....(((((.....))))).)))).. (-23.47 = -23.37 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:56 2006