Locus 4337

Sequence ID 3L_DroMel_CAF1
Location 12,753,118 – 12,753,220
Length 102
Max. P 0.639517
window6711

overview

Window 1

Location 12,753,118 – 12,753,220
Length 102
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 75.45
Mean single sequence MFE -34.02
Consensus MFE -15.78
Energy contribution -16.84
Covariance contribution 1.06
Combinations/Pair 1.36
Mean z-score -1.90
Structure conservation index 0.46
SVM decision value 0.22
SVM RNA-class probability 0.639517
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12753118 102 + 23771897
AUUUGCUGCUGUUGUUGCUGCUGCUGAAAAGGAGCCAUUUGGCAAGGAAAUUGUUGA------------------GGAUUCUGCUGGAAGUAGUUAUUCUGAUUUGGCAUCGAUAGUGGC
....((..((((((.(((((((.((....)).)))...(..((((.....))))..)------------------((((.((((.....))))..))))......)))).))))))..)) ( -33.10)
>DroSec_CAF1 10109 102 + 1
AUUUGCUGCUGUUGUUGCUGCUGCUGAAAAGGAGCCAUUUGGCAGGAAAACUGUUGA------------------GGAUUCUGCUGGAAGUAGUUAUUCUGAUUUGGCAUCGUUAGUGGC
....((..(((.((.(((((((.((....)).)))...(..((((.....))))..)------------------((((.((((.....))))..))))......)))).)).)))..)) ( -31.20)
>DroSim_CAF1 12371 102 + 1
AUUUGCUGCUGUUGUUGCUGCUGCUGAAAGGGAGCCAUUUGGCAGGAAAACUGUUGC------------------GGAUUCGGCUGGAAGUAGUUAUUCUGAUUUGGCAUCGUUAGUGGC
....((..(((.((.(((((((.((....)).))).......(((((.(((((((.(------------------((......))).)).))))).)))))....)))).)).)))..)) ( -31.30)
>DroEre_CAF1 10273 99 + 1
AUUUGCUGCUGUUGUGGC---UGCUGAAAAGGAGCCAUUUGGCAAGGAAACUGUUGA------------------GCAUUCCGCUGGAAAUAGUUAUUCUGAUUUGGCAUCGAUAGUGGC
....((..((((((((((---(.((....)).)))))((..(((.(....))))..)------------------)......((..((..(((.....))).))..))..))))))..)) ( -34.10)
>DroYak_CAF1 10414 99 + 1
AUUUGCUGCUGUUGUGGC---UGCUGAAAAGGAGCCAUUUGGCAGGGAAAGGGUUGA------------------GCAUUCUGCUGGAAAUAGUUGUUCUGAUUUGGCAUCGGCAGUGGC
..(..((((((.((((((---(.((....)).)))).((..((((((....(.....------------------.).))))))..))..................))).))))))..). ( -33.80)
>DroAna_CAF1 13317 120 + 1
AUUGGCUGCUGUUGCUGCUGCAUCAGAGAGAAUUCCGUAGGAUAGGCAUUCGGUUGCCGGCCAGGACCAGGACAGGGCCGUUGCUGGAACAUUUGACUUUGAUCGGGAGCCGAAAUGGGC
.((((((.(((.(((....)))((((((.((((.((........)).)))).(((.(((((..((.((......)).))...))))))))......)))))).))).))))))....... ( -40.60)
>consensus
AUUUGCUGCUGUUGUUGCUGCUGCUGAAAAGGAGCCAUUUGGCAGGGAAACUGUUGA__________________GGAUUCUGCUGGAAGUAGUUAUUCUGAUUUGGCAUCGAUAGUGGC
....((((((((((..((....)).........((((.....(((((.(((((((.................................))))))).)))))...))))..)))))))))) (-15.78 = -16.84 +   1.06)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:55 2006