Locus 4336

Sequence ID 3L_DroMel_CAF1
Location 12,752,769 – 12,752,871
Length 102
Max. P 0.969092
window6710

overview

Window 0

Location 12,752,769 – 12,752,871
Length 102
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 74.77
Mean single sequence MFE -23.10
Consensus MFE -12.59
Energy contribution -12.34
Covariance contribution -0.25
Combinations/Pair 1.19
Mean z-score -2.21
Structure conservation index 0.54
SVM decision value 1.64
SVM RNA-class probability 0.969092
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12752769 102 - 23771897
UUUCGAAAAGUUCUAGGUUUGUGGGCGUAACUUAUCUUGAACAG--UCAACACAAAU--GUUU-CUUCAAGCUAAGAUACCUUACAAAU------------ACCAAUUUGAACAGG-AAG
.........((((..((((((((((.(((.((((.((((((...--..((((....)--))).-.)))))).)))).))))))))))..------------))).....))))...-... ( -23.00)
>DroSec_CAF1 9766 102 - 1
UUUCGAAAAGUUCUAGGUUUGUGGGCGUAACUUAUCUUGAACAG--UCAACAUAAAU--GUUU-CUUCAAGCUAAGAUACCUUACAAAU------------ACCAAUUUGAACUGG-AAG
.(((....(((((..((((((((((.(((.((((.((((((...--..((((....)--))).-.)))))).)))).))))))))))..------------))).....))))).)-)). ( -24.30)
>DroSim_CAF1 12022 102 - 1
UUUCGAAAAGUUCUAGGUUUGUGGGCGUAACUUAUCUUGAACAG--UCAACAUAAAU--GUUU-CUUCAAGCUAAGAUACCUUACAAAU------------ACCAAUUUGAACAUG-AAG
.........((((..((((((((((.(((.((((.((((((...--..((((....)--))).-.)))))).)))).))))))))))..------------))).....))))...-... ( -23.20)
>DroEre_CAF1 9924 102 - 1
CUUCGAAAAGUCGUAUAUUUGUG-GCGUAACUUACCUUGAACAG--UCAACAUAUUU--GUUU-CUUCAAGUUAAGAUACCCUACAAAU------------GCCACUUUCAACGCGAAAG
.((((.(((((.((((..(((((-(.(((.((((.((((((...--..((((....)--))).-.)))))).)))).))).))))))))------------)).))))).....)))).. ( -25.70)
>DroYak_CAF1 10072 101 - 1
UCUCGAAAAGUCCUAUAUUUGUG-GCGUAACUUACCUUGAACAG--UCAAUAUAAAU--GUUU-CUUCAAGCUAAGAUACCUUACAAAU------------GCCACUUUCAACAGG-AGG
..........((((......(((-(((((.((((.((((((.((--.((.......)--).))-.)))))).)))).))).........------------))))).......)))-).. ( -19.52)
>DroAna_CAF1 13045 107 - 1
U---------CCCUAAGCCCGUA-AUGUAUCUUACCUUGCACAAAAUCCAAAAGAUUGUGUUUAGUGCCAGAUAAGAUACUUUACCAAUUAAAUAAUGUAAGCCAUGAUGCACUG---AA
.---------..........(((-(.((((((((.((.((((.(((..(((....)))..))).)))).)).)))))))).))))................((......))....---.. ( -22.90)
>consensus
UUUCGAAAAGUCCUAGGUUUGUG_GCGUAACUUACCUUGAACAG__UCAACAUAAAU__GUUU_CUUCAAGCUAAGAUACCUUACAAAU____________ACCAAUUUGAACAGG_AAG
................(((((((.(.(((.((((.((((((........................)))))).)))).)))).)))))))............................... (-12.59 = -12.34 +  -0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:54 2006