| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,751,134 – 12,751,254 |
| Length | 120 |
| Max. P | 0.793861 |
| Location | 12,751,134 – 12,751,254 |
|---|---|
| Length | 120 |
| Sequences | 5 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 73.58 |
| Mean single sequence MFE | -26.82 |
| Consensus MFE | -11.00 |
| Energy contribution | -11.56 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.48 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.41 |
| SVM decision value | 0.60 |
| SVM RNA-class probability | 0.793861 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12751134 120 - 23771897 CUCAGGCCGAAUCGAAUGGCAAGUCUUCAUCAGUUUCCACAGAAAGUCAGAAAAUGUCAGAAGAAAAAGUUGAAGCUAAUUCAAUCCGUAAAGAUGGGGACUUGAAAACCCCAAAGGAAA ......((...........((((((((((((..............(.((.....)).)..........((((((.....)))))).......))))))))))))...........))... ( -23.45) >DroSec_CAF1 8132 120 - 1 CUCAGGCAAAAUCAAAUGCCGAUUCUUCAUCGGUUUCUAGAGAAAGUCAGAAAAAGCCGGAAGAAAAAGUAGAAGCUGAUUCAAAUCGUAAGGAUGGAGACUUGAAAAAACCAAAGGAAA .(((((((........))))...((((((((((((((((((.....)).........(....)......)))))))).........(....)))))))))..)))............... ( -24.60) >DroSim_CAF1 10382 120 - 1 CUCAGGCAAAAUCGAAUGCCGAUUCUUCAUCGGUUUCUACAGAAAGUCAGAAAAAGUCAGAAGAAAAGGUAGAAGCCAAUUCAAAUCGUAAGGAUGGAGACUUGAAAAAACCAAAGGAAA .(((((((........))))...(((((((((((((((((......((.((.....)).)).......))))))))).........(....)))))))))..)))............... ( -30.32) >DroEre_CAF1 8297 120 - 1 CUCAGUCAAAUCUGAACGCUGUGUCUUCACCGGUUUCCACAGGAACGCCAAAGAAGUCACAAGAAAAAGUGGAAACUAAUUUAAAUCGUGAAGAUGGGGACUUGAAGAAGCCAAAGGAUA .((((((..((((..(((.((((.((((...(((((((...)))).)))...)))).))))......(((....))).........)))..))))...))).)))............... ( -28.90) >DroYak_CAF1 8457 106 - 1 CUCUGCCAAAAU------------CUAGCCUGGAAUCUUCUGAAGCUCAAAAAGAGUCGGAAGAAAAGGAGGAAACUAAUUUAACUCCUGAGGAGGGGGACUUGAAGAUCCCAAACGA-- ((((.(((....------------......)))..((((((((..((.....))..))))))))..(((((.............)))))..)))).((((........))))......-- ( -26.82) >consensus CUCAGGCAAAAUCGAAUGCCGAGUCUUCAUCGGUUUCUACAGAAAGUCAGAAAAAGUCAGAAGAAAAAGUAGAAGCUAAUUCAAAUCGUAAGGAUGGGGACUUGAAAAAACCAAAGGAAA ...................(((.(((((((((((((((((.(.....)........((....))....)))))))))..((........)).)))))))).)))................ (-11.00 = -11.56 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:53 2006