Locus 4332

Sequence ID 3L_DroMel_CAF1
Location 12,747,026 – 12,747,126
Length 100
Max. P 0.520285
window6706

overview

Window 6

Location 12,747,026 – 12,747,126
Length 100
Sequences 5
Columns 100
Reading direction reverse
Mean pairwise identity 97.20
Mean single sequence MFE -19.47
Consensus MFE -18.11
Energy contribution -18.31
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.14
Structure conservation index 0.93
SVM decision value -0.03
SVM RNA-class probability 0.520285
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12747026 100 - 23771897
AUACCUAAAUGUUUAUGCACACAACUACAGGCGCGCCGCUCAAAUAUGCAUAAACAUUUCACUUAAGAAGUCAGCCUUGAACCAGAUUAUAUGGAACAGC
......(((((((((((((..........((....)).........)))))))))))))...(((((........))))).(((.......)))...... ( -19.41)
>DroSec_CAF1 3992 100 - 1
AUACCUAAAUGUUUAUGCACACAACUACAGGCGCGCCGCUCAAAUUUGCAUAAACAUUUCGCUUAAGAAGUCAGCCUUGAACCAGAUUAUAUGGAACAGC
......(((((((((((((..........((....)).........))))))))))))).(((((((........))))).(((.......)))....)) ( -19.91)
>DroSim_CAF1 4198 100 - 1
AUACCUAAAUGUUUAUGCACACAACUACAGGCGCGCCGCUCAAAUUUGCAUAAACAUUUCGCUUAAGAAGUCAGCCUUGAACCAGAUUAUAUGGAACAGC
......(((((((((((((..........((....)).........))))))))))))).(((((((........))))).(((.......)))....)) ( -19.91)
>DroEre_CAF1 4207 100 - 1
AUACCUAAAUGUUUAUACACACAACUACAGGCGCGCCGCUCAAAUUUGCAUAAACAUUUCGCUUAAGAAGUCUGCCUUGAACCAGAUUAUAUGGAACAGC
...((.((((((((((.............((....))((........)))))))))))).........((((((........))))))....))...... ( -16.60)
>DroYak_CAF1 4238 100 - 1
AUACGUAAAUGUUUAUGCACACAACUACAGGCGCGCCGCUUAAAUUUGCAUAAACAUUUCGCUUAAGAAGUCAGCCUUGAACCAGAUUAUAUGGAACUGC
...((.(((((((((((((..........((....)).........))))))))))))))).(((((........))))).(((.......)))...... ( -21.51)
>consensus
AUACCUAAAUGUUUAUGCACACAACUACAGGCGCGCCGCUCAAAUUUGCAUAAACAUUUCGCUUAAGAAGUCAGCCUUGAACCAGAUUAUAUGGAACAGC
......(((((((((((((..........((....)).........)))))))))))))...(((((........))))).(((.......)))...... (-18.11 = -18.31 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:50 2006