Locus 4331

Sequence ID 3L_DroMel_CAF1
Location 12,743,636 – 12,743,751
Length 115
Max. P 0.582304
window6705

overview

Window 5

Location 12,743,636 – 12,743,751
Length 115
Sequences 6
Columns 115
Reading direction forward
Mean pairwise identity 82.90
Mean single sequence MFE -18.54
Consensus MFE -14.18
Energy contribution -13.10
Covariance contribution -1.08
Combinations/Pair 1.48
Mean z-score -1.51
Structure conservation index 0.76
SVM decision value 0.10
SVM RNA-class probability 0.582304
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12743636 115 + 23771897
UCUCAAUCAGCUUUUCAAUAUCUCUCAGCUUUGUUUGUAUAUCAGUGAUUGUUUUCUGUCUCUCGGGUUCUUUUGUUUCAUUAUUUAAUAAGUAUUGGAACAAUUGACAGAUAUC
...(((((((((..............))).....(((.....)))))))))...((((((............((((((((.((((.....)))).))))))))..)))))).... ( -18.38)
>DroSec_CAF1 804 115 + 1
UCUCAAUCAGCUUUUCAAUAUCUCUUAGCUUUGUCUGUAUAUCAGUUAUUGUUUUCUGUCUCUCGUGUUCUUUUGUUUCAUUAUUUAAUAAGUAUUGGAACAAUUGACAGACAUC
........((((..............)))).(((((((....(((..(....)..)))...........(..((((((((.((((.....)))).))))))))..)))))))).. ( -19.84)
>DroSim_CAF1 804 115 + 1
UCUCAAUCAGCUUCUCAAUAUCUCUCAGCUUUGUCUGUAUAUCAGUUAUUGUUUUCUGUCUCUCGUGUUCUUUUGUUUCAUUAUUUAAUAAGUAUUGGAACAAUUGACAGACAUC
........((((..............)))).(((((((....(((..(....)..)))...........(..((((((((.((((.....)))).))))))))..)))))))).. ( -19.14)
>DroEre_CAF1 805 115 + 1
UCUCAAUUAACUUUCCAAUAUCUCUCAGCUUUGUUUGUAUAUUAGUUACAAUCUUUUCUUUUUCAUGUUCUUUUGUUUCAUUAUUUAAUAAGUAUUGAAACAAUUGACAGACAUC
....................(((.((((......(((((.......))))).....................((((((((.((((.....)))).)))))))))))).))).... ( -14.50)
>DroYak_CAF1 803 115 + 1
UCUCAAUUAACUUUCCAAUAUCUCUCAGCUUUGUUUGUAUGUCAGUAACGAUUUUUUGUUUUUCAUGUUCUUUUGUUUCAUUAUUUAAUAGGUAUUGAAACAAUUGACAGACAUC
...............................((((((((((.....(((((....)))))...)))).((..((((((((.((((.....)))).))))))))..)))))))).. ( -19.30)
>DroAna_CAF1 800 115 + 1
UUUCGAUUAGUUUUCCAAUAUCCGUCAACUUUGCUUGUAUAUUGGAAGAAAUUGUCUGCCUUUCACUGUCCUUCGUCUCAUUGUUUAUCAAAUACUGGAACAACUGGCAAACAUC
....(((...(((((((((((.((.((....))..)).)))))))))))....)))((((.......(.....)((..((.((((.....)))).))..))....))))...... ( -20.10)
>consensus
UCUCAAUCAGCUUUCCAAUAUCUCUCAGCUUUGUUUGUAUAUCAGUUAUUAUUUUCUGUCUCUCAUGUUCUUUUGUUUCAUUAUUUAAUAAGUAUUGGAACAAUUGACAGACAUC
...............................(((((((....(((..........)))...........(..((((((((.((((.....)))).))))))))..)))))))).. (-14.18 = -13.10 +  -1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:49 2006