| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,739,885 – 12,739,982 |
| Length | 97 |
| Max. P | 0.790553 |
| Location | 12,739,885 – 12,739,982 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | reverse |
| Mean pairwise identity | 81.92 |
| Mean single sequence MFE | -17.92 |
| Consensus MFE | -12.01 |
| Energy contribution | -12.82 |
| Covariance contribution | 0.81 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.21 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.59 |
| SVM RNA-class probability | 0.790553 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12739885 97 - 23771897 ACAAUUGUGAACGAUCACCCGAGUUUUUCUCAACUAUCACAACUUUUUUACCACGUACGCCCAAAACCAACUGUCUGUGCGUGUU--------UUC---CUCCUCAUU ....((((((.((......))((((......)))).)))))).........((((((((..((........))..))))))))..--------...---......... ( -17.70) >DroSec_CAF1 10816 97 - 1 ACAAUUGUGAGCGAUCGCCCGAGUUCUUCUCAACUAUCACAACUUUUUUACCACGUACGCCCAAAACCAACUGCCUGUGCGUGUU--------UUC---CUCCUCAUU ....((((((((....))..(((.....))).....)))))).........((((((((..((........))..))))))))..--------...---......... ( -19.30) >DroSim_CAF1 10807 97 - 1 ACAAUUGUGAGCGAUCACCCGAGUUCUUCUCAACUAUCACCACUUUUUUACCACGUACGCCCAAAACCAACUGUCUGUGCGUGUU--------UUC---CUCCUCAUU ......(((((.((......(((.....)))....................((((((((..((........))..))))))))..--------...---.))))))). ( -18.80) >DroEre_CAF1 10784 97 - 1 ACAAUUGCGAGCGAUCACCCGAGUUUUUCUCCACUAUCACAACUUUCUUACCACGUACGCCCAAAACCAACUGUCUGUGCGUGUU--------UUC---CUCCUCAUU ........(((.((......(((.....)))....................((((((((..((........))..))))))))..--------...---.)))))... ( -16.60) >DroYak_CAF1 10707 97 - 1 ACAAUUGCGAGCGAUCACCCGAGUUUUUCUCAACUAUCACAACUUUCUUACCACGUACGCCCAAAACCAAUUGUCUGUGCGUAUU--------UUC---CUCCUCAUU ........(((.((......(((.....))).....................(((((((..(((......)))..)))))))...--------...---.)))))... ( -15.90) >DroMoj_CAF1 11456 108 - 1 ACAACUGCGAACGAUCUCCAGAAUUCUUUUCCAUUAUGACGACCUUUUUGUCAUUAACACCCAGCACUAAUUGUUUGAAUUUGUCAUCUGGCUUGUCGCCAUCUCGCU ......((((.((((..(((((.............(((((((.....)))))))...((..(((......)))..)).........)))))...)))).....)))). ( -19.20) >consensus ACAAUUGCGAGCGAUCACCCGAGUUCUUCUCAACUAUCACAACUUUUUUACCACGUACGCCCAAAACCAACUGUCUGUGCGUGUU________UUC___CUCCUCAUU ......(((((.((......(((.....)))....................((((((((..((........))..)))))))).................))))))). (-12.01 = -12.82 + 0.81)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:48 2006