Locus 4329

Sequence ID 3L_DroMel_CAF1
Location 12,724,706 – 12,724,802
Length 96
Max. P 0.576727
window6703

overview

Window 3

Location 12,724,706 – 12,724,802
Length 96
Sequences 4
Columns 112
Reading direction forward
Mean pairwise identity 70.83
Mean single sequence MFE -21.77
Consensus MFE -11.16
Energy contribution -11.54
Covariance contribution 0.38
Combinations/Pair 1.41
Mean z-score -1.71
Structure conservation index 0.51
SVM decision value 0.09
SVM RNA-class probability 0.576727
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12724706 96 + 23771897
AGUGAAUGUCUACUUUUCACAUGAUUCAAGUGGAUUUUAUAGUUCAGUC----------------ACAAAGCUUAGAACUUUUGCUCGUCGGCUUGAAUUUCAAUUUACAUC
.(((((.........)))))..(((((((((.(((.....((((((((.----------------.....)))..))))).......))).)))))))))............ ( -21.40)
>DroSec_CAF1 79 86 + 1
AGUGAAUGCCUACUCUUCACAUGAUUCAAGUGGAUUUUAUAGUUUAGUU----------------ACAAAGCUUAGAACUUUUACUCGUCGGCUUGAG----------UACC
.(((((.........)))))...((((((((.(((.....(((((((((----------------....))))..))))).......))).)))))))----------)... ( -19.20)
>DroSim_CAF1 80 96 + 1
AGUGAAUGCCUACUAUUCACAUGAUUCAAGUGGAUUUUAUAGUUCAGUU----------------ACAAAGCUUAGAACUUUUACUCGUCGACUUGAAUUUCAAUUCAUAUC
.(((((((.....)))))))..(((((((((.(((.....(((((((((----------------....))))..))))).......))).)))))))))............ ( -23.80)
>DroYak_CAF1 80 112 + 1
AGUAAAUCCCUAGUUUCCAAAUGUUUUAAGCGGGGCCUAUGGCUUAGUUACAUUUUCACGCACAUGCAAAGUUAAGGACUUUCGCUCUUCGGCUCGAUUUGCAAUUCAUACU
.(((((((.......(((((((((.((((((.(......).))))))..))))))....((....))........))).....(((....)))..))))))).......... ( -22.70)
>consensus
AGUGAAUGCCUACUUUUCACAUGAUUCAAGUGGAUUUUAUAGUUCAGUU________________ACAAAGCUUAGAACUUUUACUCGUCGGCUUGAAUUUCAAUUCAUACC
.(((((.........)))))..(((((((((.(((.....(((((..............................))))).......))).)))))))))............ (-11.16 = -11.54 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:47 2006