Locus 4328

Sequence ID 3L_DroMel_CAF1
Location 12,723,459 – 12,723,561
Length 102
Max. P 0.587434
window6702

overview

Window 2

Location 12,723,459 – 12,723,561
Length 102
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 87.75
Mean single sequence MFE -20.13
Consensus MFE -14.45
Energy contribution -14.53
Covariance contribution 0.08
Combinations/Pair 1.12
Mean z-score -1.73
Structure conservation index 0.72
SVM decision value 0.11
SVM RNA-class probability 0.587434
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12723459 102 + 23771897
AAUAGUCAGAUUAUAAAUAUUGCAAAUGGGGUUACAACACCCCAGCUCACUAAUUCCAGUGUAUUAAAAAGUGAGUCACUUUU---UGUACAUAAUAUCUAUGAA
..........(((((.(((((((...((((((......))))))))............((((((.((((((((...)))))))---)))))))))))).))))). ( -24.00)
>DroSec_CAF1 3834 101 + 1
AAUAGUCAGAGUAUUAAUAUUGCAAAUGGGGUUACAACACCCUAGCUCACUAAUUUCAGUGUAUUAAAAAGUGAGUCACUAUAUAAUGUACA----AUCCAUUAA
.(((((....(((.......)))...((((((......))))))(((((((..................))))))).))))).(((((....----...))))). ( -17.67)
>DroSim_CAF1 4218 101 + 1
AAUAGUCAGAGUAUUAAUAUUGCAAAUGGGGUUACAACACCCUAGCUCACUAAUUCCAGUGUAUUAAAAAGUGAGUCACUAUAUAAUGUACA----AUCCAUGAA
.....(((..(.....((((((....((((((......))))))(((((((..................))))))).......))))))...----..)..))). ( -16.77)
>DroEre_CAF1 3808 102 + 1
GCUAGUGAGAGUAUAAAUAUUGAAAAUGGGGUUACAACACCCUAGCUCACUUAUUCCAGUGUAUUAAAAAGUGAGUCACUUUA---UGUACAUUAUAUCCAUAAA
...((((((((((....)))).....((((((......)))))).))))))......(((((((...((((((...)))))).---.)))))))........... ( -22.20)
>DroYak_CAF1 3645 102 + 1
GAUAGUCAAAGCAUAAAUAUUGCAAAUAGGGUUACAACACCCUAGCUCACUUAUUCCAGUGUAUUAAAACGUGAGUCACUUUA---UGUACAUUAUAUCCGUGAA
..........(((.......)))...((((((......))))))..((((..((...(((((((((((((....))...))))---.)))))))..))..)))). ( -20.00)
>consensus
AAUAGUCAGAGUAUAAAUAUUGCAAAUGGGGUUACAACACCCUAGCUCACUAAUUCCAGUGUAUUAAAAAGUGAGUCACUUUA___UGUACAU_AUAUCCAUGAA
....................((((..((((((......))))))(((((((..................)))))))..........))))............... (-14.45 = -14.53 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:46 2006