Locus 4322

Sequence ID 3L_DroMel_CAF1
Location 12,703,744 – 12,703,843
Length 99
Max. P 0.948534
window6684

overview

Window 4

Location 12,703,744 – 12,703,843
Length 99
Sequences 4
Columns 108
Reading direction forward
Mean pairwise identity 79.32
Mean single sequence MFE -23.80
Consensus MFE -9.77
Energy contribution -9.21
Covariance contribution -0.56
Combinations/Pair 1.15
Mean z-score -4.22
Structure conservation index 0.41
SVM decision value 1.38
SVM RNA-class probability 0.948534
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12703744 99 + 23771897
CGCGAAAAGCAAUAAACUAAAAUUAAGUCGGAAAACGUGUCAAAGUCAGUGUUCAGUGCUCAGUGCAC---------CACUGACAGUGAUGCAAAGACAAACAAAAAC
.((.....))................((((.....)((((((..(((((((....((((.....))))---------)))))))..))))))...))).......... ( -27.50)
>DroEre_CAF1 69509 89 + 1
CAUGAAAAGCAAUAAACUAAAAUUAAGUCGGAAAACGUGUCAAAGUCA--------------GUGCUCACUG-----CACUGACAGUGAUGCAAAGACAAACAUAAAC
..........................((((.....)((((((..((((--------------((((.....)-----)))))))..))))))...))).......... ( -24.80)
>DroWil_CAF1 371498 88 + 1
CAUAUAAAGCUAUAAACCUAAAUUAAGUCAGAAAACGUGUCAAAGUCA--------------GUACUCAGU------UACUGACAGUGACGCAAAGAAAAUUAUAAAC
..(((((...................((......))((((((..((((--------------(((......------)))))))..))))))........)))))... ( -19.00)
>DroYak_CAF1 69936 94 + 1
CAUGGAAAGCAAUAAACUAAAAUUAAGUCGGAAAACGUGUCAAAGUCA--------------GUGCUCACUGCACUGCACUGACAGUGAUGCAAAGACAAACAUAAAC
..........................((((.....)((((((..((((--------------((((..........))))))))..))))))...))).......... ( -23.90)
>consensus
CAUGAAAAGCAAUAAACUAAAAUUAAGUCGGAAAACGUGUCAAAGUCA______________GUGCUCACU______CACUGACAGUGAUGCAAAGACAAACAUAAAC
....................................((((((..((((..............(((............)))))))..))))))................ ( -9.77 =  -9.21 +  -0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:28 2006