Locus 4320

Sequence ID 3L_DroMel_CAF1
Location 12,702,695 – 12,702,804
Length 109
Max. P 0.958921
window6682

overview

Window 2

Location 12,702,695 – 12,702,804
Length 109
Sequences 5
Columns 110
Reading direction forward
Mean pairwise identity 91.33
Mean single sequence MFE -25.23
Consensus MFE -22.64
Energy contribution -23.68
Covariance contribution 1.04
Combinations/Pair 1.09
Mean z-score -1.62
Structure conservation index 0.90
SVM decision value 1.50
SVM RNA-class probability 0.958921
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12702695 109 + 23771897
ACUCUGUAUUUGCCCUCGUAUUUACAUGUGCACAUCAUGCUUGUACACUCGAUGUGUAAAAAUAUAUAAGACCACUUGUGAUA-AAGCUAGAAAUGAGUAGGAAUACAAG
....(((((((...(((((.(((((...((((((((..(........)..))))))))......((((((....))))))...-..).)))).)))))...))))))).. ( -22.20)
>DroSec_CAF1 66329 108 + 1
ACUCUGUAUUUGCCCUCGUAUUUACAUGUGCACAUCAUGCUUGUACACUCGAUGUGUAA-AAUAUAUAAGACCACUUGUGAAA-AAGCUAGAAAUGAGGAGGAAUACAAG
....(((((((..((((((.(((((...((((((((..(........)..)))))))).-....((((((....))))))...-..).)))).))))))..))))))).. ( -27.00)
>DroSim_CAF1 65088 109 + 1
ACUCUGUAUUUGCCCUCGUAUUUACAUGUGCACAUCAUGCUUGUACACUCGAUGUGUAA-AAUAUAUAAGACCACUUGUGAAAAAAGCUAGAAAUGAGGAGGAAUACAAG
....(((((((..((((((.(((((...((((((((..(........)..)))))))).-....((((((....))))))......).)))).))))))..))))))).. ( -27.00)
>DroEre_CAF1 68411 103 + 1
GCUCUGUAUUUGCCCUCGUAUUUACAUGUGCACAUCGUGCUUGUUCACUCGAUGUGUAA-AAUAUAUAAGGCCACUUGUGAAA-AAGCUAA-AACGAGGAUGCAUA----
..........(((((((((.(((((...(((((((((.(........).))))))))).-....((((((....))))))...-..).)))-)))))))..)))..---- ( -27.20)
>DroYak_CAF1 68845 104 + 1
GCUCUGUAUUUGCCCUCGUAUUUACAUGUGCACAUCAUGCUUGUUCACUCGAUGUGUAA-AAUAUAUAGGACCACUUGUGAAG-AAGCUAAAAAUGAGGAUGCAUA----
....((((..(((....)))..))))((((((..((((((((.(((((.....(((...-............)))..))))).-)))).....))))...))))))---- ( -22.76)
>consensus
ACUCUGUAUUUGCCCUCGUAUUUACAUGUGCACAUCAUGCUUGUACACUCGAUGUGUAA_AAUAUAUAAGACCACUUGUGAAA_AAGCUAGAAAUGAGGAGGAAUACAAG
....(((((((..((((((.(((((...((((((((..............))))))))......((((((....))))))......).)))).))))))..))))))).. (-22.64 = -23.68 +   1.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:26 2006