Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 12,685,764 – 12,685,859 |
Length | 95 |
Max. P | 0.990205 |
Location | 12,685,764 – 12,685,859 |
---|---|
Length | 95 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 86.02 |
Mean single sequence MFE | -23.16 |
Consensus MFE | -20.75 |
Energy contribution | -20.59 |
Covariance contribution | -0.16 |
Combinations/Pair | 1.05 |
Mean z-score | -2.24 |
Structure conservation index | 0.90 |
SVM decision value | 2.20 |
SVM RNA-class probability | 0.990205 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12685764 95 - 23771897 -UAUAUA----CUCCACCUAUUGAUUGGGGUUUUAUCUUCUUUUUUUUUUAGAAUGCUGUAAACCGAUUAGAGGUGCGUGGUCCAAAUGGAGUCACUACU -......----...(((((.((((((((..(......((((.........))))......)..))))))))))))).(((((((....))).)))).... ( -22.20) >DroSec_CAF1 49536 91 - 1 -UAUAUA----CUCCACCUAUUGAUCGGGU----AUUUCUUUGUUUUUUUAGAAUGCUGUAAACCGAUUAGAGGUGCGUGGUCCAAAUGGAGUCACUACU -......----...(((((.((((((((((----(((.((..(....)..)))))))......))))))))))))).(((((((....))).)))).... ( -23.00) >DroSim_CAF1 48309 87 - 1 -UAUAUA----CUCCACCUAUUGAUCGGGU----AUUUU----UUUUUUUAGAAUGCUGUAAACCGAUUAGAGGUGCGUGGUCCAAAUGGAGUCACUACU -......----...(((((.((((((((((----(((((----.......)))))))......))))))))))))).(((((((....))).)))).... ( -24.70) >DroEre_CAF1 50164 81 - 1 AUAUAUA----CUUCACCUAUUGAUCGGA---------------UUUUUUAGAAUGCUGUAAACCGAUUAGAGGUGCGUGGUCCAAAUGGAGUCACUACU .......----...(((((.((((((((.---------------(((..(((....))).)))))))))))))))).(((((((....))).)))).... ( -22.90) >DroYak_CAF1 51401 85 - 1 AUAUAUACAUACAUCACCUAUUGAUCGGG---------------UUUUUUAGAAUGCUGUAAACCGAUUAGAGGUGCGUGGUCCAAAUGGAGUCACUACU ..............(((((.((((((((.---------------.....(((....)))....))))))))))))).(((((((....))).)))).... ( -23.00) >consensus _UAUAUA____CUCCACCUAUUGAUCGGG_____AU_U_____UUUUUUUAGAAUGCUGUAAACCGAUUAGAGGUGCGUGGUCCAAAUGGAGUCACUACU ..............(((((.((((((((...................................))))))))))))).(((((((....))).)))).... (-20.75 = -20.59 + -0.16)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:18 2006