| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,659,879 – 12,659,972 |
| Length | 93 |
| Max. P | 0.871750 |
| Location | 12,659,879 – 12,659,972 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | forward |
| Mean pairwise identity | 80.57 |
| Mean single sequence MFE | -25.87 |
| Consensus MFE | -19.12 |
| Energy contribution | -19.45 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.87 |
| SVM RNA-class probability | 0.871750 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12659879 93 + 23771897 AGCAUU--CGAC------UGU-GAAUCCUCGGCUCAAGUUGAGUUGUUAUGCUUCCGUUGAGUGUUGGCAAAUAUUUAACGUAGUAUAAAUAUCC--------CCCCCUC ...(((--((((------(.(-((..(...)..)))))))))))..(((((((..(((((((((((....))))))))))).)))))))......--------....... ( -23.80) >DroVir_CAF1 28632 87 + 1 ----------GU------GCUGAAAUCCACUGCUCAAGUUGAGUUGUUAUGCUUGAGUUGAGUGUUGGCAAAUAUUUAACGUAGUAUAAAUAUCUCUGGCU------C-C ----------..------(((((...(((..((((((.(..(((......)))..).))))))..)))...(((((((........))))))).)).))).------.-. ( -21.00) >DroSec_CAF1 23953 94 + 1 AGCAUUCUCGAC------UGA-GAAUCCUCGGCUCAAGUUGAGUUGUUAUGCUUCCGUUGAGUGUUGGCAAAUAUUUAACGUAGUAUAAAUAUCC--------GCCCC-C .((...((((((------(((-(.........))).)))))))...(((((((..(((((((((((....))))))))))).)))))))......--------))...-. ( -27.50) >DroEre_CAF1 24458 97 + 1 A---U--UCGAC------UGG-GAAUCCUGGGCUCAAGUUGAGUUGUUAUGCUUCAGUUGAGUGUUGGCAAAUAUUUAACGUAGUAUAAAUAUCUCUUGGUUAGCCCC-C (---(--((...------...-))))...(((((((((..((....(((((((...((((((((((....))))))))))..)))))))...)).))))...))))).-. ( -28.00) >DroYak_CAF1 24322 97 + 1 A---U--UCGAC------UGA-GAAUCCUCGGCUCAAGUUGAGUUGUUAUGCUUCAGUUGAGUGUUGGCAAAUAUUUAACGUAGUAUAAAUAUCUCUUGGUUAGCCCC-C .---.--..(((------..(-((...((((((....))))))...(((((((...((((((((((....))))))))))..))))))).....)))..)))......-. ( -28.40) >DroAna_CAF1 24696 100 + 1 AG-----UCAACGAGUCGUCU-GAAUCCUCGGCUCAAGUUGAGUUGUUAUGCUUCAGUUGAGUGUUGGCAAAUAUUUAACGUAGUAUAAAUAUCUCUG--UC-UCCCC-U ((-----.((..((((((...-.......)))))).....(((...(((((((...((((((((((....))))))))))..)))))))....)))))--.)-)....-. ( -26.50) >consensus A___U__UCGAC______UGU_GAAUCCUCGGCUCAAGUUGAGUUGUUAUGCUUCAGUUGAGUGUUGGCAAAUAUUUAACGUAGUAUAAAUAUCUCU___U__GCCCC_C .............................((((((.....))))))(((((((...((((((((((....))))))))))..)))))))..................... (-19.12 = -19.45 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:12 2006