Locus 431

Sequence ID 3L_DroMel_CAF1
Location 1,257,120 – 1,257,220
Length 100
Max. P 0.571930
window628

overview

Window 8

Location 1,257,120 – 1,257,220
Length 100
Sequences 4
Columns 100
Reading direction reverse
Mean pairwise identity 85.47
Mean single sequence MFE -28.45
Consensus MFE -18.73
Energy contribution -21.04
Covariance contribution 2.31
Combinations/Pair 1.11
Mean z-score -1.66
Structure conservation index 0.66
SVM decision value 0.08
SVM RNA-class probability 0.571930
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1257120 100 - 23771897
GUGAACUGGACUGCACUUUCAGUGGACUUUCUAGUGCCAUAAUACACGGAAGUUGGUAACCGAAAACCCAUUGAGAAGGGGGUCGAGUUGGCGAAUUGGA
((.((((.((((.(..(((((((((..((((...(((((......((....)))))))...))))..)))))))))..).)))).)))).))........ ( -37.60)
>DroSec_CAF1 11907 95 - 1
GUGAACCGGA-----CUUUCAGUGGACUUUCUAGUGCCAUAAUACACGGAAGUUGGUAACCGAAAACCCAUUGAAAAGGGGGUCGAGUUGGCGAACUGGA
((.(((((..-----((((((((((..((((...(((((......((....)))))))...))))..))))))))....))..)).))).))........ ( -27.60)
>DroSim_CAF1 11853 95 - 1
GUGAACCGGA-----CUUUCAGUGGACUUUCUAGUGCCAUAAUACACGGAAGUUGGUAACCGAAAACCCAUUGAAAAGGGGGUCGAGUUGGCGAAUUGGA
((.(((((..-----((((((((((..((((...(((((......((....)))))))...))))..))))))))....))..)).))).))........ ( -27.60)
>DroYak_CAF1 11900 81 - 1
------------------UCAGUGGACUUUCUAGUGCCACAAUACACGGAAGUCGGUAACCGAAAACCCAUUGGGAAGG-GGUCGAGCUGGGGAACGGGA
------------------(((((.(((((((..(((........))))))))))......(((...(((........))-).))).)))))......... ( -21.00)
>consensus
GUGAACCGGA_____CUUUCAGUGGACUUUCUAGUGCCAUAAUACACGGAAGUUGGUAACCGAAAACCCAUUGAAAAGGGGGUCGAGUUGGCGAACUGGA
((.((((((.......(((((((((..((((...(((((......((....)))))))...))))..)))))))))......))).))).))........ (-18.73 = -21.04 +   2.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:38 2006