Locus 4307

Sequence ID 3L_DroMel_CAF1
Location 12,644,019 – 12,644,126
Length 107
Max. P 0.653201
window6663

overview

Window 3

Location 12,644,019 – 12,644,126
Length 107
Sequences 5
Columns 109
Reading direction reverse
Mean pairwise identity 80.44
Mean single sequence MFE -34.44
Consensus MFE -22.20
Energy contribution -23.00
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -1.75
Structure conservation index 0.64
SVM decision value 0.25
SVM RNA-class probability 0.653201
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12644019 107 - 23771897
CAGUCGAUCGGGAGCGGCAUUAGUGCGGACAUAAUGGUCCCAGUUGCCGGUUCCCAGUUAACCUCCAUGGUGAACAGCA--GAAGGGAUCACCCACAUGCCACGAUCUG
.....((((((((((((((..(.((.((((......)))))).))))).)))))).(((.(((.....))).))).(((--...(((....)))...)))...)))).. ( -40.20)
>DroSec_CAF1 8377 106 - 1
CAGUCGAUCGGGAGCGGCAUUAGUGCGGACAUAAUGCUCCCAGUUGCCAGUUCCCAGUUAACCUCCAUGGUGAACAGCA---AAGGGAUCACCCACAUGCCCCGAUCUG
.....(((((((.(((((((((((....)).))))))((((..((((..(((((((...........))).)))).)))---).)))).........)))))))))).. ( -38.30)
>DroSim_CAF1 8178 92 - 1
CAGUCGAUCGGGAGCGGCAUUAGUGCGGACAUAAUGGUCC--------------CAGUUAACCUCCAUGGUGAACAGCG---AAGGGAUCACCCACAUGCCCCGAUCUG
.....(((((((.(((((.....((.((((......))))--------------))(((.(((.....))).))).)).---..(((....)))...)))))))))).. ( -34.30)
>DroEre_CAF1 8524 81 - 1
CAGUCGAUCGGGAGCGGCAUUAGU-----------G--------------UUCCCAGUUAACCUCCAUGGCAAACAGG---CAAGGGAUCACCCACAUGCCCCGUUCUG
(((.((...(((((((.(....))-----------)--------------))))).(((..((.....))..))).((---((.(((....)))...)))).))..))) ( -23.20)
>DroYak_CAF1 7908 95 - 1
CAGUCGAUCGGGAGCGGCAUUAGUGCGGACCUAAUG--------------UUCCCAGUUAACCUCCAUGGAGAACGGGGAGUAAGGGAUCACCCACAUGCCCCGAUCUG
.....(((((((.((((((((((.......))))))--------------)((((.(((..((.....))..))).))))....(((....)))...)))))))))).. ( -36.20)
>consensus
CAGUCGAUCGGGAGCGGCAUUAGUGCGGACAUAAUG_UCC__________UUCCCAGUUAACCUCCAUGGUGAACAGCA___AAGGGAUCACCCACAUGCCCCGAUCUG
.....(((((((.(((........................................(((.(((.....))).))).........(((....)))...)))))))))).. (-22.20 = -23.00 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:09 2006