Locus 4305

Sequence ID 3L_DroMel_CAF1
Location 12,636,925 – 12,637,029
Length 104
Max. P 0.713629
window6660

overview

Window 0

Location 12,636,925 – 12,637,029
Length 104
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 80.14
Mean single sequence MFE -32.42
Consensus MFE -17.12
Energy contribution -17.56
Covariance contribution 0.44
Combinations/Pair 1.23
Mean z-score -2.36
Structure conservation index 0.53
SVM decision value 0.38
SVM RNA-class probability 0.713629
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12636925 104 + 23771897
UAGUGUUCAAAGCCGGGGAAGUGUCAGCCAGCCAAAUUGACAGGCAAAGGCAGAG-UA-------AACGAUUUUGGAGAUUUGUCAUUGAUAAGUCCGGCCAGAGUGGUAAA--------
...........(((((.((....))..)).(((.........)))...)))....-..-------.((.(((((((.((((((((...))))))))...))))))).))...-------- ( -27.00)
>DroPse_CAF1 128977 110 + 1
UAGUGUU-AGGGCUGCAGAAGUGUCAGCAAGCCAAAUUGACAGGCAAAGGCAAAGGCA-------AACGAUUUUGGAGAUUUGUCAUUGAUAAGUC-GGCCGCAGUGCUGAA-GUCUAAA
(((..((-((.(((((.....((((((.........))))))(((.....(((((...-------.....)))))..((((((((...))))))))-.)))))))).)))).-..))).. ( -32.30)
>DroGri_CAF1 136891 118 + 1
UGGUGCA-CAAGACGCCGAAGUGUCAACAAGCCAAAUUGACAGGCAUUGGCAAUGGCAAAACAGAAACGAUUUUGGAGAUUUGUCAUUGAUAAGUC-GGCCACAGUGCCCAAAAACCAAA
(((.(((-(.....(((((..((((.....(((((..((.....)))))))(((((((((.(((((....)))))....)))))))))))))..))-)))....)))))))......... ( -37.90)
>DroPer_CAF1 130877 109 + 1
UAGUGUU-AGGGCUGCAGAAGUGUCAGCAAGCCAAAUUGACAGGCAAAGGCAAAGGCA-------AACGAUU-UGGAGAUUUGUCAUUGAUAAGUC-GGCCGCAGUGCUGAA-GUCUAAA
(((..((-((.(((((.....((((((.........))))))(((....((....)).-------..(((((-((..(((.....)))..))))))-))))))))).)))).-..))).. ( -32.50)
>consensus
UAGUGUU_AAAGCCGCAGAAGUGUCAGCAAGCCAAAUUGACAGGCAAAGGCAAAGGCA_______AACGAUUUUGGAGAUUUGUCAUUGAUAAGUC_GGCCACAGUGCUGAA_GUCUAAA
(((..((...((((...((..((((((...(((.........)))...((((((.........................)))))).))))))..)).))))..))..))).......... (-17.12 = -17.56 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:06 2006