Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 12,629,812 – 12,629,902 |
Length | 90 |
Max. P | 0.657234 |
Location | 12,629,812 – 12,629,902 |
---|---|
Length | 90 |
Sequences | 4 |
Columns | 90 |
Reading direction | forward |
Mean pairwise identity | 87.22 |
Mean single sequence MFE | -25.35 |
Consensus MFE | -22.36 |
Energy contribution | -22.93 |
Covariance contribution | 0.56 |
Combinations/Pair | 1.22 |
Mean z-score | -1.47 |
Structure conservation index | 0.88 |
SVM decision value | 0.26 |
SVM RNA-class probability | 0.657234 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12629812 90 + 23771897 AUUUAUUUCAAGUGUAAAAUUGAGGAAUUCGAUGACAGGGGGAUAAAUGUUUUAAUCGUGGGUGGUUGGGCGUAUUGAUCGCCUGCCUGU ((((((..(...(((...((((((...)))))).)))..)..)))))).........(..((((((..(.....)..))))))..).... ( -23.90) >DroSim_CAF1 121177 90 + 1 AUUUAUUUCAAGUGUAAAAUUGAGAAAUUUGAUGACAGGGGGAUAAAUGUGCUAAUGGCGGGUGGUUGGGCGGAUUGAUCGCCUGCCUGU ((((((..(...(((.(((((....)))))....)))..)..))))))........((((((((((..(.....)..))))))))))... ( -28.20) >DroEre_CAF1 121667 90 + 1 AUUCACUCCAAGUGUAAAAUAGGGGAACGCGAUGACAGGGGGAUAUAUGUUCUAAUGGUGGGUGGUUGGGCGGCCUGAUCGCCUGCCCGU .....((((............))))...(((........(((((....)))))...((..((((((..((...))..))))))..))))) ( -26.30) >DroYak_CAF1 123225 90 + 1 AUUUACUUCAAGUGUAAAAUCGAGGAAUGUGAUGACAGGGGGAUAUGUGUUCUAAUGGUGGGUGGUUGGGCGAUCUGAUCGCCUGCCCGU .(((((.......))))).....((..........((..(((((....)))))..))(..((((((..(.....)..))))))..))).. ( -23.00) >consensus AUUUACUUCAAGUGUAAAAUUGAGGAAUGCGAUGACAGGGGGAUAAAUGUUCUAAUGGUGGGUGGUUGGGCGGACUGAUCGCCUGCCCGU (((((((((...(((...((((.......)))).)))..)))))))))........((((((((((..(.....)..))))))))))... (-22.36 = -22.93 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:05 2006