| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,609,822 – 12,609,914 |
| Length | 92 |
| Max. P | 0.841547 |
| Location | 12,609,822 – 12,609,914 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 83.26 |
| Mean single sequence MFE | -23.11 |
| Consensus MFE | -17.12 |
| Energy contribution | -18.18 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.64 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.75 |
| SVM RNA-class probability | 0.841547 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12609822 92 + 23771897 ACACAA--------ACAAGCGGCA-CGUUACUUGCAACGCCUACGAUAUUAAUAAACCAUUGGGCGAAGCACUUGCG-GCGCCGCACAAAGCAAAUAAAAUA ......--------....(((((.-(((....(((..((((((.................))))))..)))...)))-..)))))................. ( -25.63) >DroGri_CAF1 107018 93 + 1 --AU------AGUUAAACGCUUCUCGGCUGCCAGCUACGCCUACAAAAUUAAUAUACCGCUGGG-GCAGCACUUGCGGGUGUCAUACAAAACAAAUAAAAUA --..------.(.((..(((......(((((((((.......................)))..)-)))))....)))..)).)................... ( -17.50) >DroSec_CAF1 97847 100 + 1 ACACACACACACACACAAGCGGCA-CGUUACUUGCAACGCCUACGAUAUUAAUAAACCAUUGGGCGAAGCACUUGCG-GCGCCGCACAAAGCAAAUAAAAUA ..................(((((.-(((....(((..((((((.................))))))..)))...)))-..)))))................. ( -25.63) >DroSim_CAF1 100712 96 + 1 ACACAC----ACCCACAAGCGGCA-CGUUACUUGCAACGCCUACGAUAUUAAUAAACCAUUGGGCGAAGCACUUGCG-GCACCGCACAAAGCAAAUAAAAUA ......----........((((..-(((....(((..((((((.................))))))..)))...)))-...))))................. ( -21.63) >DroEre_CAF1 100892 90 + 1 AC--AC--------AAAAGCGGCA-CGUUACUUGCAACGCCUACGAUAUUAAUAAACCAUUGGGCGAAGCACUUGCG-GCGCCGCACAAAGCAAAUAAAAUA ..--..--------....(((((.-(((....(((..((((((.................))))))..)))...)))-..)))))................. ( -25.63) >DroYak_CAF1 101746 92 + 1 ACACAC--------AAAAGCCGCA-CGUUACUUGCAACGCCUACGAUAUUAAUAAAGCAUUGGGCGAAGCACUUGCG-GCGCCGCACAAAGCAAAUAAAAUA ......--------....((((((-.((.....((..((((((.................))))))..)))).))))-))...((.....)).......... ( -22.63) >consensus ACACAC________AAAAGCGGCA_CGUUACUUGCAACGCCUACGAUAUUAAUAAACCAUUGGGCGAAGCACUUGCG_GCGCCGCACAAAGCAAAUAAAAUA ..................(((((..(((....(((..((((((.................))))))..)))...)))...)))))................. (-17.12 = -18.18 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:19:00 2006