Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 12,608,668 – 12,608,771 |
Length | 103 |
Max. P | 0.679580 |
Location | 12,608,668 – 12,608,771 |
---|---|
Length | 103 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 77.10 |
Mean single sequence MFE | -32.47 |
Consensus MFE | -22.06 |
Energy contribution | -22.17 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.04 |
Mean z-score | -1.22 |
Structure conservation index | 0.68 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.679580 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12608668 103 + 23771897 CUACACUCCGUCCGGAUGGGUAUGUGCGCAAAACCAG--CGCACAUUCGUCAGAAUUUGCAUUUCAAUUCGAAUGUCAGGAUGACGGAGCGUCGAAUUUGGGUGG--------------- (.((.(((((((..(((((..((((((((.......)--))))))))))))....(((((((((......))))).))))..))))))).)).)...........--------------- ( -34.00) >DroVir_CAF1 107102 88 + 1 -------CCGACCC--------UAGGCGCACAAUGUG--CGCACAUUCGUCAGAAUUUGCAUUUCAAUUCGAAUGUCAGGAUGACGGAGCGUCGAAUUUGGGUGG--------------- -------((.((((--------...((((((...)))--)))((.(((((((...((.((((((......)))))).))..)))))))..)).......))))))--------------- ( -29.10) >DroPse_CAF1 98441 93 + 1 ---UGUUCCAUCCGGGCGG-------CGC--AACCAGCGCGCACAUUCGUCAGAAUUUGCAUUUCAAUUCGAAUGUCAGGAUGACGGAGCGUCGAAUUUGGGUGG--------------- ---....((((((((.(((-------(((--.....(....)...(((((((...((.((((((......)))))).))..)))))))))))))...))))))))--------------- ( -32.00) >DroEre_CAF1 99700 89 + 1 CUCCACUCCGGCCGGAUGGGU--------------AG--CGCACAUUCGUCAGAAUUUGCAUUUCAAUUCGAAUGUCAGGAUGACGGAGCGUCGAAUUUGGGUGG--------------- ..((((.((((((.....)))--------------.(--(((...(((((((...((.((((((......)))))).))..)))))))))))......)))))))--------------- ( -26.60) >DroAna_CAF1 93528 117 + 1 AUCCAUUCCGUCCGUG-GGGCAUGUGCGCCAAACCAG--CGCACAUUCGUCAGAAUUUGCAUUUCAAUUCGAAUGUCAGGAUGACGGAGCGUCGAAUUUGGGUGGCAGUGGCGGUGAAAG ..(((((((..(((((-(.((.(((((((.......)--))))))(((((((...((.((((((......)))))).))..))))))))).)))....)))..)).)))))......... ( -40.50) >DroPer_CAF1 100422 93 + 1 ---UGUUCCAUCCGGGCGA-------CGC--AACCAGCGCGCACAUUCGUCAGAAUUUGCAUUUCAAUUCGAAUGUCAGGAUGACGGAGCGUCGAAUUUGGGUGG--------------- ---....((((((((.(((-------(((--.....(....)...(((((((...((.((((((......)))))).))..)))))))))))))...))))))))--------------- ( -32.60) >consensus ___CAUUCCGUCCGGG_GG_______CGC__AACCAG__CGCACAUUCGUCAGAAUUUGCAUUUCAAUUCGAAUGUCAGGAUGACGGAGCGUCGAAUUUGGGUGG_______________ .......((((((...........................(((.((((....)))).))).....(((((((.((((.....)))).....))))))).))))))............... (-22.06 = -22.17 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:57 2006