Locus 4296

Sequence ID 3L_DroMel_CAF1
Location 12,606,871 – 12,606,963
Length 92
Max. P 0.996166
window6647

overview

Window 7

Location 12,606,871 – 12,606,963
Length 92
Sequences 5
Columns 92
Reading direction reverse
Mean pairwise identity 89.55
Mean single sequence MFE -23.33
Consensus MFE -22.02
Energy contribution -21.62
Covariance contribution -0.40
Combinations/Pair 1.09
Mean z-score -1.96
Structure conservation index 0.94
SVM decision value 2.66
SVM RNA-class probability 0.996166
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12606871 92 - 23771897
CAUAUCCUUAUGCCAUCCGCAUAUGAACAAUCGUGUGUGACUAACACUCAUGUGGAUGUGCCUCCUGUGUGUUGUUCUUGGACUUCCAGCGU
(((((......(((((((((((((((....))))((((.....))))..))))))))).)).....)))))......((((....))))... ( -23.90)
>DroSec_CAF1 94747 89 - 1
---AUCCUUAUACCAUCCACAUAUGAACAUUCAUGUGUGACUAACACUCAUGUGGAUGUGCCUCCUGUGUGUUGUUCUUGGACUUCCACCGU
---.........(((..(((((((((....)))))))))..((((((.((.(.((.....)).).)).))))))....)))........... ( -22.40)
>DroSim_CAF1 97573 92 - 1
CAUAUCCUUAAACCAUCCACAUAUGAACAAUCAUGUGUGACUAACACUCAUGUGGAUGUGCCUCCUGUGUGUUGUUCUUGGACUUCCACCGU
............(((..(((((((((....)))))))))..((((((.((.(.((.....)).).)).))))))....)))........... ( -22.40)
>DroEre_CAF1 97881 91 - 1
UAUGAGUU-ACACCCUCCACAUAUGAACAAUCAUGUGUGACUAACACUCAUGUGGAUGCGCCUCCUGUGUGUUGUUCUUGGACUUCCACUGU
.((((((.-........(((((((((....)))))))))......))))))(((((.(((((....).)))).(((....))).)))))... ( -24.06)
>DroYak_CAF1 98548 91 - 1
UAUAUGCU-UAAGCAUCCGCAUAUGAACCAUCAUGUGUGACUAACACUCAUGUGGAUGUGCCUCCUGUGUGUUGUUCUUGGACUUCCACUGU
...((((.-...)))).(((((((((....)))))))))..((((((.((.(.((.....)).).)).))))))....(((....))).... ( -23.90)
>consensus
CAUAUCCUUAAACCAUCCACAUAUGAACAAUCAUGUGUGACUAACACUCAUGUGGAUGUGCCUCCUGUGUGUUGUUCUUGGACUUCCACCGU
.................(((((((((....)))))))))..((((((.((.(.((.....)).).)).))))))....(((....))).... (-22.02 = -21.62 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:53 2006