Locus 4295

Sequence ID 3L_DroMel_CAF1
Location 12,605,688 – 12,605,791
Length 103
Max. P 0.985058
window6646

overview

Window 6

Location 12,605,688 – 12,605,791
Length 103
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 86.23
Mean single sequence MFE -22.03
Consensus MFE -17.72
Energy contribution -18.24
Covariance contribution 0.52
Combinations/Pair 1.13
Mean z-score -2.50
Structure conservation index 0.80
SVM decision value 1.99
SVM RNA-class probability 0.985058
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12605688 103 + 23771897
CGACACAAAUUCUUAUAUAAUGUCUUUAUUAUCAUCCCUAGACGUAGUACUUCAUAGGGGUGAUGAUUCUCAAGUAGAAAUGACAUUUCACUUCAAAAUUU---UU
..................((((((....((((((((((((((.(.....).)).))))))))))))((((.....))))..))))))..............---.. ( -22.60)
>DroSec_CAF1 93569 106 + 1
CGACACAAAUUCUUAUAUAAUGUCUUUAUUAUCAUCCCUAGACGUUGAACUUCAUAGGGGUGACAAUUCUCAAGUAGAAAUGACACUUUACUUCAAAGUAUAACUU
............((((((.............(((((((((((.(.....).)).)))))))))........(((((((........)))))))....))))))... ( -18.80)
>DroSim_CAF1 96384 106 + 1
CGACACAAAUUCUUAUAUAAUGUCUUUAUUAUCAUCCCUAGACGUUGAACUUCAUAGGGGUGAUAGUUCUUAAGUAGAAAUGACAUUUUACUUCAAAGUAUAACUU
..................((((((....((((((((((((((.(.....).)).))))))))))))((((.....))))..)))))).((((....))))...... ( -23.50)
>DroEre_CAF1 96743 105 + 1
CUACUCAAAUUCUUAUAUAAUGUCUUGAUUAUCAUCCCUAGACGCAGGCACUCAUAGGGGUGGUAAUUCAUAACUAGAAAUUA-AAUUUACCUUAAAAUAUAAUUU
.....................((..(((((((((((((((((.(......))).)))))))))))).)))..))...((((((-.((((......)))).)))))) ( -20.10)
>DroYak_CAF1 97267 106 + 1
CGACUCAAAUUCUUAUAUAAUGUCUUGAUUAUCAUCCCUAGACGUAGAGCCUCAUAGGGGUGAUAAUUUAUAAGUAGAAAUGACAAUUUACUUAAAAAUAUCAUUU
.(((.................)))..((((((((((((((((.(.....).)).))))))))))))))..((((((((........))))))))............ ( -25.13)
>consensus
CGACACAAAUUCUUAUAUAAUGUCUUUAUUAUCAUCCCUAGACGUAGAACUUCAUAGGGGUGAUAAUUCUUAAGUAGAAAUGACAAUUUACUUCAAAAUAUAACUU
...........................(((((((((((((((.(.....).)).)))))))))))))....(((((((........)))))))............. (-17.72 = -18.24 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:52 2006