Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 12,580,990 – 12,581,115 |
Length | 125 |
Max. P | 0.835472 |
Location | 12,580,990 – 12,581,094 |
---|---|
Length | 104 |
Sequences | 6 |
Columns | 110 |
Reading direction | reverse |
Mean pairwise identity | 83.71 |
Mean single sequence MFE | -27.32 |
Consensus MFE | -20.24 |
Energy contribution | -20.30 |
Covariance contribution | 0.06 |
Combinations/Pair | 1.08 |
Mean z-score | -1.97 |
Structure conservation index | 0.74 |
SVM decision value | 0.25 |
SVM RNA-class probability | 0.652105 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12580990 104 - 23771897 -AGAAAGGCU---UCUUACUUAAGUGUUGUUUCAUGUCACCUGGAAAGCAUUUGGACAUGAAAUUGUCGCUUUUCAGUAUGUGGCACAC--ACACAGAUACUCACACAUA -.(((((((.---...(((....)))..((((((((((..((....))......))))))))))....)))))))(((((.((......--...)).)))))........ ( -25.30) >DroGri_CAF1 74628 107 - 1 -UGCUGUGCUUCCUCUUGCUUAAGUGUUGUUUCAUGUCACCUGGAAAGCAAUUGGACAUGAAAUUGUCGCUUUUCAGUAUGUGGCACAC--ACACACACACACGCUGACA -.(((((((........))....(((((((....(((((((((((((((.....((((......)))))))))))))...))))))...--))).))))))).))..... ( -29.70) >DroSec_CAF1 69045 106 - 1 -AGAAAGGCU---UCUUACUUAAGUGUUGUUUCGUGUCACCUGGAAAGCAUUUGGACAUGAAAUUGUCGCUUUUCAGUAUGUGGCACACACACACAGAUACUCACACAUA -.(((((...---.....)))..(((((((...((((((((((((((((.....((((......)))))))))))))...)))))))))).))))......))....... ( -28.60) >DroWil_CAF1 132641 103 - 1 --AUUCUGCU---GCUUACUUAAGUGUUGUUUCAUGUCACCUGAAAACCAUUUGGACAUUAAAUUGUCGCUUUUCAGUAUAUGGCACAC--CCACAUACAGACAAUCAUC --....((((---(..((((.(((((..((((.(((((...((.....))....))))).))))...)))))...))))..)))))...--................... ( -18.50) >DroMoj_CAF1 69143 108 - 1 CAGCUUUGCUUCCUCUUACUUAAGUGUUGUUUCAUGUCACCUGGAAAGCAAUUGGACAUGAAAUUGUCGCUUUUCACUAUGUGGCACAC--ACACACAGAGAGAGAGGCA ......(((((((((((....(((((..((((((((((..((....))......))))))))))...))))).......((((.....)--)))....))))).)))))) ( -33.90) >DroAna_CAF1 67540 104 - 1 -CGGACGGCU---UCUUACUUAAGUGUUGUUUCAUGUCACCUGGAAAGCAUUUGGACAUGAAAUUGUCGCUUUUCAGUAUGUGGCUCAC--ACCGAUACACACACACACA -(((..((((---...((((.(((((..((((((((((..((....))......))))))))))...)))))...))))...))))...--.)))............... ( -27.90) >consensus _AGAAAGGCU___UCUUACUUAAGUGUUGUUUCAUGUCACCUGGAAAGCAUUUGGACAUGAAAUUGUCGCUUUUCAGUAUGUGGCACAC__ACACACACACACACACACA .......(((......((((.(((((..((((((((((...((.....))....))))))))))...)))))...))))...)))......................... (-20.24 = -20.30 + 0.06)
Location | 12,581,022 – 12,581,115 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 74.18 |
Mean single sequence MFE | -20.72 |
Consensus MFE | -15.30 |
Energy contribution | -15.47 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.00 |
Mean z-score | -1.06 |
Structure conservation index | 0.74 |
SVM decision value | 0.73 |
SVM RNA-class probability | 0.835472 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12581022 93 - 23771897 --------CACCA-CCCCACCUCC--UUCCCC------AGAAAGGCU---UCUUACUUAAGUGUUGUUUCAUGUCACCUGGAAAGCAUUUGGACAUGAAAUUGUCGCUUUUCA --------.....-..........--......------.(((((((.---...(((....)))..((((((((((..((....))......))))))))))....))))))). ( -20.20) >DroVir_CAF1 73595 105 - 1 ----UGCUG--CU-G-CCGCCUCCCAUUCCGCUGGCUGUGCCAUGCUUCCUCUUACUUAAGUGUUGUUUCAUGUCACCUGGAAAGCAAUUGGACAUGAAAUUGUCGCUUUUCA ----.((((--..-(-(.(((............))).))..)).))............(((((..((((((((((..((....))......))))))))))...))))).... ( -24.60) >DroWil_CAF1 132673 89 - 1 --------CC-CAGC-CCAACCCC--UCCC---------AUUCUGCU---GCUUACUUAAGUGUUGUUUCAUGUCACCUGAAAACCAUUUGGACAUUAAAUUGUCGCUUUUCA --------..-((((-........--....---------.....)))---).......(((((..((((.(((((...((.....))....))))).))))...))))).... ( -12.13) >DroMoj_CAF1 69175 96 - 1 -----------GA-G-CCUCACUCCACUCCACU----CAGCUUUGCUUCCUCUUACUUAAGUGUUGUUUCAUGUCACCUGGAAAGCAAUUGGACAUGAAAUUGUCGCUUUUCA -----------((-(-.....))).........----.....................(((((..((((((((((..((....))......))))))))))...))))).... ( -17.60) >DroAna_CAF1 67572 90 - 1 --------CC-UG-C-CCGG-CCA--UCCCCC------CGGACGGCU---UCUUACUUAAGUGUUGUUUCAUGUCACCUGGAAAGCAUUUGGACAUGAAAUUGUCGCUUUUCA --------..-..-.-..((-((.--(((...------.))).))))---........(((((..((((((((((..((....))......))))))))))...))))).... ( -25.40) >DroPer_CAF1 72743 100 - 1 GCCCUGGCCCUGG-C-CCCCCAUC--UGCCCC------CAGACUGCU---GCCUCCUUAAGUGUUGUUUCAUGUCACCUGGAAAGCAUUUGGACAUGAAAUUGUCGCUUUUCA ((...(((....)-)-).....((--((....------))))..)).---........(((((..((((((((((..((....))......))))))))))...))))).... ( -24.40) >consensus ________CC_CA_C_CCACCCCC__UUCCCC______AGCACUGCU___UCUUACUUAAGUGUUGUUUCAUGUCACCUGGAAAGCAUUUGGACAUGAAAUUGUCGCUUUUCA ..........................................................(((((..((((((((((...((.....))....))))))))))...))))).... (-15.30 = -15.47 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:44 2006