| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 1,255,320 – 1,255,436 |
| Length | 116 |
| Max. P | 0.944823 |
| Location | 1,255,320 – 1,255,436 |
|---|---|
| Length | 116 |
| Sequences | 5 |
| Columns | 117 |
| Reading direction | forward |
| Mean pairwise identity | 77.87 |
| Mean single sequence MFE | -25.17 |
| Consensus MFE | -10.04 |
| Energy contribution | -9.76 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.33 |
| Mean z-score | -2.37 |
| Structure conservation index | 0.40 |
| SVM decision value | 1.35 |
| SVM RNA-class probability | 0.944823 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1255320 116 + 23771897 -CCUGCACAAUAAACUUUCAAACUCUUAAUGAGAUUUUGUGUGUAAUAUCAAAUGCUUUGACCCCCAAGGUAAUCACAAUAUUUGUACCUAAGCACAGGAUCUCUUUGUGCGUUAAC -...((((((....................((((((((((((.......(((((((((((.....)))))).........))))).......)))))))))))).))))))...... ( -27.64) >DroSec_CAF1 10138 113 + 1 -CCCGCACAAAAGAUUUUCAAACUCUUAAUGAGAUUUUCG--GUACUAUCAAAUGCUUUGACC-CCAAGGUAAUCAAAAUAUUCGUACCUAAGCACAGAUUCUCUUUGUGCGCUAAC -..(((((((((((...((...(((.....)))......(--(((((((....(((((((...-.)))))))......)))...)))))........)).))).))))))))..... ( -25.20) >DroSim_CAF1 10108 113 + 1 -CCCGCACAAAAGAUUUUCAAACUCUUAAUGAGAUUUUGU--GUACUAUCAAAUGCUUUGACC-CCAAGGUAAUCACAAUAUUCGUACCUAAGCACAGAUUCUCUUUGUGCGCUAAC -..(((((((((((.........))))...((((.(((((--((.........(((((((...-.)))))))...((.......))......))))))).)))).)))))))..... ( -27.10) >DroEre_CAF1 9969 107 + 1 GCAUGCAUGAAAGAUUGUUAAGGAU-UGUUUGGUUUAU--------GCUCAAAUCCAUUGACC-CCAAGCUAAUCACAAUAUUUGUACCAAAGCUCAGACUUUCUUUGUGCGUUAGC ((((((((.(((((..(((..((((-(....(((....--------)))..))))).......-...((((....(((.....))).....))))..)))..)))))))))))..)) ( -20.90) >DroYak_CAF1 10178 108 + 1 GCUUUGACAAAAGACUUUCAAACUUCUAAUGAGCUUUU--------GCUCAAAUUCAUUGACC-CCGGGGUAAUCACAAUAUUUGUGCCCAAGCACAGACUUUCUUUGUGCGUUAAC ..(((((((((((.(((.............))))))))--------).)))))....(((((.-...(((....((((.....)))))))..(((((((.....)))))))))))). ( -25.02) >consensus _CCUGCACAAAAGAUUUUCAAACUCUUAAUGAGAUUUU____GUA_UAUCAAAUGCUUUGACC_CCAAGGUAAUCACAAUAUUUGUACCUAAGCACAGACUCUCUUUGUGCGUUAAC ...(((((((.(((...((.............................((((.....))))......(((((.............))))).......))...))))))))))..... (-10.04 = -9.76 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:35 2006