Locus 4286

Sequence ID 3L_DroMel_CAF1
Location 12,551,021 – 12,551,114
Length 93
Max. P 0.554154
window6623

overview

Window 3

Location 12,551,021 – 12,551,114
Length 93
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 78.59
Mean single sequence MFE -20.29
Consensus MFE -14.68
Energy contribution -15.84
Covariance contribution 1.16
Combinations/Pair 1.16
Mean z-score -1.37
Structure conservation index 0.72
SVM decision value 0.04
SVM RNA-class probability 0.554154
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12551021 93 - 23771897
U-CGGGUGUGAAAGAAGGGUCAGGAUGCGAUACGCACCACACACACACACACACACUCUACUCUAUGCGGCAACCUUUCCCUUUUUUUUUUU-UU
.-.......((((((((((..(((.(((....((((.............................))))))).)))..))))))))))....-.. ( -19.85)
>DroPse_CAF1 41195 82 - 1
UCCAUGUCCGGGAGAAGGGUCAGGAU-----ACGCACCACACAC------ACACAC-AUACGCAACGC-ACAACCUUUCCCUUUUGUCAUUGCUG
.........((.(((((((..(((..-----..((.........------......-.........))-....)))..))))))).))....... ( -14.86)
>DroSec_CAF1 39204 86 - 1
U-CGGGUCGGAAAGAAGGGUCAGGAUGCGAUACGCACCACACAC------ACACACUCUACUCUAUGUGGCAACCUUUCCCUUUUUU-UUUU-UU
.-......(((((((((((..(((.((((...))))(((((...------...............)))))...)))..)))))))))-))..-.. ( -22.37)
>DroSim_CAF1 40418 85 - 1
U-CGGGUCGGAAAGAAGGGUCAGGAUGCGAUACGCACCACACAC------ACACACUCUACUCUAUGUGGCAACCUUUCCCUUUUU--UUUU-UU
.-......(((((((((((..(((.((((...))))(((((...------...............)))))...)))..))))))))--))).-.. ( -22.37)
>DroEre_CAF1 40078 78 - 1
UCCGGGUCUGAAAGAAGGGUCAGGAUGCGAUACGCACCACA----------C-------ACUCUAUGUGGCAACCUUUCCCUUUUCUCUUUUUUC
.........((.(((((((..(((.((((...))))(((((----------.-------......)))))...)))..))))))).))....... ( -22.00)
>consensus
U_CGGGUCGGAAAGAAGGGUCAGGAUGCGAUACGCACCACACAC______ACACACUCUACUCUAUGUGGCAACCUUUCCCUUUUUU_UUUU_UU
.........((((((((((..(((.(((....(((...............................)))))).)))..))))))))))....... (-14.68 = -15.84 +   1.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:31 2006