Locus 4283

Sequence ID 3L_DroMel_CAF1
Location 12,544,726 – 12,544,817
Length 91
Max. P 0.756020
window6617

overview

Window 7

Location 12,544,726 – 12,544,817
Length 91
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 86.35
Mean single sequence MFE -34.42
Consensus MFE -25.84
Energy contribution -26.08
Covariance contribution 0.24
Combinations/Pair 1.15
Mean z-score -1.85
Structure conservation index 0.75
SVM decision value 0.49
SVM RNA-class probability 0.756020
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12544726 91 - 23771897
AAUGCUAGAUGGCCAGAAUGUCAGAGUGGCAGAGUGGCUGGCUCAAACUAAGCCGGUCGGU----UGGUCGGUCACCCAACUGUCUGUCAGUUCC
...(((...((((......)))).)))((((((..((((((((.......))))))))(((----(((........)))))).))))))...... ( -31.60)
>DroSec_CAF1 32888 95 - 1
AAUGCUAGAUGGCCAGAAUGUCAGAGUGACAGAGUGGCUGGCUCGAACUAAGCCGGUCGGUUGGUCGGUCGGUCACCCAACUGUCUGUCAGUUCC
...(((.(((((.(((..((((.....))))(.(((((((((.(((....((((....))))..)))))))))))).)..))).))))))))... ( -34.90)
>DroSim_CAF1 33464 95 - 1
AAUGCUAGAUGGCCAGAAUGUCAGAGUGGCAGAGUGGCUGGCUCGAACUAAGCCGGUCGGUCGGUUGGUCGGUCACCCAACUGUCUGUCAGUUCC
...(((...((((......)))).)))((((((.(((((((((.......)))))))))..(((((((........)))))))))))))...... ( -33.40)
>DroEre_CAF1 34059 79 - 1
ACUGCUAGACGGGCAGAAU--------GGCAGAGUGGCUGGCUCAAACUAAGCCGGUC--------GGUCGGUCACCCAACUGUCUGUCAGUUCC
...(((.(((((((((..(--------(((.((.(((((((((.......))))))))--------).)).)))).....))))))))))))... ( -35.10)
>DroYak_CAF1 33775 87 - 1
ACAGCUAGAUGGGCAGAAU--------GGCAGAGUGACUGGCUCGAACUAAGCCGGUCGGUUGGUCGGUCGGUCACCCAACUGUCUGUCAGUUCC
..((((.(((((((((..(--------((....(((((((((.(((....((((....))))..))))))))))))))).))))))))))))).. ( -37.10)
>consensus
AAUGCUAGAUGGCCAGAAUGUCAGAGUGGCAGAGUGGCUGGCUCGAACUAAGCCGGUCGGU_GGUCGGUCGGUCACCCAACUGUCUGUCAGUUCC
...(((.(((((.(((...........(((.((.(((((((((.......))))))))).)).....)))((....))..))).))))))))... (-25.84 = -26.08 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:26 2006