Locus 4282

Sequence ID 3L_DroMel_CAF1
Location 12,541,854 – 12,541,955
Length 101
Max. P 0.774025
window6616

overview

Window 6

Location 12,541,854 – 12,541,955
Length 101
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 85.77
Mean single sequence MFE -27.32
Consensus MFE -21.83
Energy contribution -21.83
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.34
Structure conservation index 0.80
SVM decision value 0.54
SVM RNA-class probability 0.774025
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12541854 101 + 23771897
UAAAUUUAACCGCUUCGGGACACAGU-CCGUUGUUGUUUAACAGCAAUAACAACUUUUGGUUUGUU-UCCUUACAUUUUUAAUUGGGUCCUUUGUGG----CUGGCA-------------
.........((((...(((((.((((-..((((((((......)))))))).......((......-.))...........)))).)))))..))))----......------------- ( -23.10)
>DroPse_CAF1 29589 119 + 1
UAUAUUUAACCGCUUCGGGACACAGUUUCGUUGUUGUUUAACAGCAAUAACAACUUUUGGUUUGUU-UCCUUACAUUUUUAAUUGGGUCCUUUGUGGUCUUCUGGCCGCCCGAUGGCCAC
........(((((...(((((.(((((..((((((((......)))))))).......((......-.))..........))))).)))))..)))))....((((((.....)))))). ( -33.20)
>DroGri_CAF1 32482 101 + 1
UAAAUUUAACCGCUUCGGGACACACU-GCGUUGUUGUUUAACAGCAAUAACAACUUUUGGUUUGUUUUCCUUACAUUUUUAAUUGGGUCCUUUGUGG----UCG-CC-------------
........(((((...(((((.....-..((((((((......))))))))..(..((((..(((.......)))...))))..).)))))..))))----)..-..------------- ( -23.30)
>DroWil_CAF1 59526 100 + 1
UAAAUUUAACCGCUUCGGGACACACU-CCGUUGUUGUUUAACAGCAAUAACAUCUUUUGGUUUGUU-UCCUUACAUUUUUAAUUGGGUCCUUUGUGG----UUG-UU-------------
......(((((((...(((((.....-..((((((((......)))))))).((..((((..(((.-.....)))...))))..)))))))..))))----)))-..------------- ( -26.40)
>DroMoj_CAF1 30740 100 + 1
UAAAUUUAACCGCUUCGGGACAUACG-GCGUUGUUGUUUAACAGCAAUAACAACUUUUGGUUUGUU-UCCUUACAUUUUUAAUUGGGUCCUUUGUGG----UCG-GU-------------
.....(..(((((...(((((.....-..((((((((......))))))))..(..((((..(((.-.....)))...))))..).)))))..))))----)..-).------------- ( -24.70)
>DroPer_CAF1 29591 119 + 1
UAUAUUUAACCGCUUCGGGACACAGUUUCGUUGUUGUUUAACAGCAAUAACAACUUUUGGUUUGUU-UCCUUACAUUUUUAAUUGGGUCCUUUGUGGUCUUCUGGCCGCCCGAUGGCCAC
........(((((...(((((.(((((..((((((((......)))))))).......((......-.))..........))))).)))))..)))))....((((((.....)))))). ( -33.20)
>consensus
UAAAUUUAACCGCUUCGGGACACACU_CCGUUGUUGUUUAACAGCAAUAACAACUUUUGGUUUGUU_UCCUUACAUUUUUAAUUGGGUCCUUUGUGG____CUG_CC_____________
.........((((...(((((........((((((((......))))))))..(..((((..(((.......)))...))))..).)))))..))))....................... (-21.83 = -21.83 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:25 2006