Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,246,395 – 1,246,490 |
Length | 95 |
Max. P | 0.588575 |
Location | 1,246,395 – 1,246,490 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 89.20 |
Mean single sequence MFE | -28.05 |
Consensus MFE | -20.85 |
Energy contribution | -20.97 |
Covariance contribution | 0.11 |
Combinations/Pair | 1.13 |
Mean z-score | -3.09 |
Structure conservation index | 0.74 |
SVM decision value | 0.11 |
SVM RNA-class probability | 0.588575 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1246395 95 - 23771897 AUUUUGCUCAGGGUUAA----AAUCGGUGCGAAAAAGGAGGGACGGAUGGCAACCAGUUUCGACCCUGGGCUAAGUGAAAUAAAAACUUAAUAAGUUUG ((((.(((((((((..(----(((.(((((.(....(......)...).)).))).))))..))))))))).)))).......(((((.....))))). ( -28.80) >DroSec_CAF1 1310 95 - 1 AUUUUGCUCAGGGUUAA----AAUCGGUGCGAAUAAGGAGGGACGGAUGGCAACCAGUUUGGACCCUGGGCUAAGUGAAAUAAAAACUUAAUAAGUUUG ((((.((((((((((.(----(((.(((((..((..(......)..)).)).))).)))).)))))))))).)))).......(((((.....))))). ( -28.70) >DroSim_CAF1 1316 95 - 1 AUUUUGCUCAGGGUUAA----AAUCGGUGCGAAAAAGGAGGGACGGAUGGCAACCAGUUUCGACCCUGGGCUAAGUGAAAUAAAAACUUAAUAAGUUUG ((((.(((((((((..(----(((.(((((.(....(......)...).)).))).))))..))))))))).)))).......(((((.....))))). ( -28.80) >DroEre_CAF1 1399 94 - 1 AUUUUGCUCAGGGUUG-----AAUCGGUGCGAAAAAGGAGGGACGGAUGGCAACCAGUUUCGACCCUGGGCUAAGUGAAAUAAAAACUUCAUAAAUUUG .....(((((((((((-----((..(((((.(....(......)...).)).)))...)))))))))))))...(((((........)))))....... ( -30.00) >DroYak_CAF1 1350 94 - 1 AUUUUGCUCAGGGUUG-----AGUCGGUGCGAAAAAGGAGGGACGGAUGGCAACCAGUUUCGACCCUGGGCUAAGUGAAAUAAAAACUUCAUAAAUUUG .....(((((((((((-----((..(((((.(....(......)...).)).)))...)))))))))))))...(((((........)))))....... ( -29.70) >DroAna_CAF1 1383 93 - 1 AUUUUGUUCAGGGUUAAGGUAAAGGGAUGC---AAGGGAGAGA---AGGGCAACCAGUUUCGACCCUGGAUCAAGUGAAAUAAAAACUAUAUAAAUUUG ((((.((((((((((...(((......)))---......((((---.((....))..)))))))))))))).))))....................... ( -22.30) >consensus AUUUUGCUCAGGGUUAA____AAUCGGUGCGAAAAAGGAGGGACGGAUGGCAACCAGUUUCGACCCUGGGCUAAGUGAAAUAAAAACUUAAUAAAUUUG ((((.((((((((((........(((...))).......(((((....(....)..))))))))))))))).))))....................... (-20.85 = -20.97 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:34 2006