Locus 428

Sequence ID 3L_DroMel_CAF1
Location 1,246,395 – 1,246,490
Length 95
Max. P 0.588575
window624

overview

Window 4

Location 1,246,395 – 1,246,490
Length 95
Sequences 6
Columns 99
Reading direction reverse
Mean pairwise identity 89.20
Mean single sequence MFE -28.05
Consensus MFE -20.85
Energy contribution -20.97
Covariance contribution 0.11
Combinations/Pair 1.13
Mean z-score -3.09
Structure conservation index 0.74
SVM decision value 0.11
SVM RNA-class probability 0.588575
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 1246395 95 - 23771897
AUUUUGCUCAGGGUUAA----AAUCGGUGCGAAAAAGGAGGGACGGAUGGCAACCAGUUUCGACCCUGGGCUAAGUGAAAUAAAAACUUAAUAAGUUUG
((((.(((((((((..(----(((.(((((.(....(......)...).)).))).))))..))))))))).)))).......(((((.....))))). ( -28.80)
>DroSec_CAF1 1310 95 - 1
AUUUUGCUCAGGGUUAA----AAUCGGUGCGAAUAAGGAGGGACGGAUGGCAACCAGUUUGGACCCUGGGCUAAGUGAAAUAAAAACUUAAUAAGUUUG
((((.((((((((((.(----(((.(((((..((..(......)..)).)).))).)))).)))))))))).)))).......(((((.....))))). ( -28.70)
>DroSim_CAF1 1316 95 - 1
AUUUUGCUCAGGGUUAA----AAUCGGUGCGAAAAAGGAGGGACGGAUGGCAACCAGUUUCGACCCUGGGCUAAGUGAAAUAAAAACUUAAUAAGUUUG
((((.(((((((((..(----(((.(((((.(....(......)...).)).))).))))..))))))))).)))).......(((((.....))))). ( -28.80)
>DroEre_CAF1 1399 94 - 1
AUUUUGCUCAGGGUUG-----AAUCGGUGCGAAAAAGGAGGGACGGAUGGCAACCAGUUUCGACCCUGGGCUAAGUGAAAUAAAAACUUCAUAAAUUUG
.....(((((((((((-----((..(((((.(....(......)...).)).)))...)))))))))))))...(((((........)))))....... ( -30.00)
>DroYak_CAF1 1350 94 - 1
AUUUUGCUCAGGGUUG-----AGUCGGUGCGAAAAAGGAGGGACGGAUGGCAACCAGUUUCGACCCUGGGCUAAGUGAAAUAAAAACUUCAUAAAUUUG
.....(((((((((((-----((..(((((.(....(......)...).)).)))...)))))))))))))...(((((........)))))....... ( -29.70)
>DroAna_CAF1 1383 93 - 1
AUUUUGUUCAGGGUUAAGGUAAAGGGAUGC---AAGGGAGAGA---AGGGCAACCAGUUUCGACCCUGGAUCAAGUGAAAUAAAAACUAUAUAAAUUUG
((((.((((((((((...(((......)))---......((((---.((....))..)))))))))))))).))))....................... ( -22.30)
>consensus
AUUUUGCUCAGGGUUAA____AAUCGGUGCGAAAAAGGAGGGACGGAUGGCAACCAGUUUCGACCCUGGGCUAAGUGAAAUAAAAACUUAAUAAAUUUG
((((.((((((((((........(((...))).......(((((....(....)..))))))))))))))).))))....................... (-20.85 = -20.97 +   0.11) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:34 2006