Locus 4279

Sequence ID 3L_DroMel_CAF1
Location 12,530,422 – 12,530,520
Length 98
Max. P 0.694749
window6611

overview

Window 1

Location 12,530,422 – 12,530,520
Length 98
Sequences 3
Columns 98
Reading direction forward
Mean pairwise identity 90.48
Mean single sequence MFE -24.87
Consensus MFE -23.17
Energy contribution -22.73
Covariance contribution -0.44
Combinations/Pair 1.10
Mean z-score -1.59
Structure conservation index 0.93
SVM decision value 0.34
SVM RNA-class probability 0.694749
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12530422 98 + 23771897
UAUAAUUGUGGAGAAUUGUGAAGUCGAGGUUGAGGGUUGUGGUGACUCUCUAAAUGGGUGCGACUUUCUAUAGCUUUAAAGCGCAAAAAUCAAACAGA
.....((((.((...(((((...(..((((((.(((..((.((.((((.......)))))).))..))).))))))..)..)))))...))..)))). ( -23.10)
>DroSec_CAF1 18677 98 + 1
UAUAAUUGUGGAGGUUUGUGGAGUCGAGGGUGCGGGUUGUGGGGAUUCUCUAAAUGGAUGCCACUUUCUAUAUCUUUAAAGCGCAAAAAUCGAACAGA
.....((((.((..((((((...(..((((((..((..((((.(.(((.......)))).))))..))..))))))..)..))))))..))..)))). ( -26.40)
>DroSim_CAF1 19199 98 + 1
UAUAAUUGUGGAGGAUUGUGGAGUCGAGGGUAAGGGUUGUGGUGAUUCACAAAAUGGAUGCCACUUUCUAUAUCUUUAAAGCGCAAAAAUCAAACAGA
.....((((.((...(((((...(..((((((.(((..(((((.(((((.....))))))))))..))).))))))..)..)))))...))..)))). ( -25.10)
>consensus
UAUAAUUGUGGAGGAUUGUGGAGUCGAGGGUGAGGGUUGUGGUGAUUCUCUAAAUGGAUGCCACUUUCUAUAUCUUUAAAGCGCAAAAAUCAAACAGA
.....((((.((...(((((...(..((((((.(((..(((((.((((.......)))))))))..))).))))))..)..)))))...))..)))). (-23.17 = -22.73 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:20 2006