Locus 4278

Sequence ID 3L_DroMel_CAF1
Location 12,528,907 – 12,529,003
Length 96
Max. P 0.689045
window6610

overview

Window 0

Location 12,528,907 – 12,529,003
Length 96
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 72.84
Mean single sequence MFE -30.89
Consensus MFE -15.19
Energy contribution -15.88
Covariance contribution 0.70
Combinations/Pair 1.19
Mean z-score -1.72
Structure conservation index 0.49
SVM decision value 0.32
SVM RNA-class probability 0.689045
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12528907 96 - 23771897
AACCUUUAAAAAUCGGCAGCGGAAACGACAAGGCCAGAGGUAGAAG---AAGACCAGGCCAUCGACGGUGGUGGCC--GCCGCGACUUGGUCAUGA-GCUUG
.((((((.......(((..((....)).....))))))))).....---..(((((((...(((.((((((...))--))))))))))))))....-..... ( -34.81)
>DroSec_CAF1 17189 99 - 1
AACCUUUAAAAAUCGGCAGCGGAAACGACAAGGCCAGAGGUAGAAGAAGAAGAUCAGGCCAUCGACGGUGGUGGCC--GCCGCGACUUGGUCAUGA-GCUUG
.((((((.......(((..((....)).....)))))))))........(((.(((((((((((.((((((...))--)))))))..))))).)))-.))). ( -34.81)
>DroSim_CAF1 17036 99 - 1
NNNNNNNNNNNNNNNNNNNNNNNNNNNACAAGGCCAGAGGUAGAAGAAGAAGAUCAGGCCAUCGACGGUGGUGGCC--GCCGCGACUUGGUCAUGA-GCUUG
............................(((((((...)))............(((((((((((.((((((...))--)))))))..))))).)))-.)))) ( -23.80)
>DroEre_CAF1 17268 93 - 1
AACCUUUAAAAAUCGGCAGCGGAAACGACAAGGCCAGAGGUAGAAG---AAGACCAGGCCGGCGACGGUGGUGGCC-----GCGACUUGGUCAUGA-GCUUG
.((((((.......(((..((....)).....))))))))).....---..((((((((((((.((....)).)))-----).).)))))))....-..... ( -34.31)
>DroYak_CAF1 17748 98 - 1
AACCUUUAAAAAUCAGCAGCGGAAACGACAAGGCCAGAGGUAGAAG---AAGAGCAGGUCGUCGACGGUGGUGGCCUGGUGGCGACUUGGUCAUGA-GCUUG
.((((((........((..((....)).....)).)))))).....---..((.((((((((((..(((....)))...)))))))))).))....-..... ( -29.10)
>DroAna_CAF1 15399 84 - 1
--------------AGGAGCGGAAACGACAAGGCCAGCAGCAGAAGCAGCAGA--ACGUCGUCGUCGGUGGUGGCC--ACAAUACCGUGGUUGCGGUACCGG
--------------.((.(((....)).)..(((((((.((....)).))...--.(..((....))..).)))))--....((((((....)))))))).. ( -28.50)
>consensus
AACCUUUAAAAAUCGGCAGCGGAAACGACAAGGCCAGAGGUAGAAG___AAGACCAGGCCAUCGACGGUGGUGGCC__GCCGCGACUUGGUCAUGA_GCUUG
...................((....)).((.((((((.(((...........))).((((((((....))))))))..........)))))).))....... (-15.19 = -15.88 +   0.70)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:19 2006