Locus 4276

Sequence ID 3L_DroMel_CAF1
Location 12,526,234 – 12,526,328
Length 94
Max. P 0.863958
window6607

overview

Window 7

Location 12,526,234 – 12,526,328
Length 94
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 87.07
Mean single sequence MFE -25.92
Consensus MFE -22.20
Energy contribution -22.20
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.72
Structure conservation index 0.86
SVM decision value 0.84
SVM RNA-class probability 0.863958
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12526234 94 + 23771897
UAUAGCAUAUAGCAUA-----UAUCGCAAACUGGCAACUGGCAAGCGAGAUCAGCGGGUCGGAUGUUAGCCGCAGCCAGGCAACGGCCAAAAUUAUAAA
((((((.....)).))-----))..((...((((((.(((((..((.......))..))))).))))))..)).(((.(....))))............ ( -25.10)
>DroSec_CAF1 14524 87 + 1
UAUAG-------CAUA-----UAUCGCAAACUGGCAACUGGCAAGCGAGAUCAGCGGGUCGGAUGUUAGCCGCAGCCAGGCAACGGCCAAAAUUAUAAA
(((((-------....-----....((...((((((.(((((..((.......))..))))).))))))..)).(((.(....)))).....))))).. ( -24.00)
>DroSim_CAF1 14329 87 + 1
UAUAG-------CAUA-----UAUCGCAAACUGGCAACUGGCAAGCGAGAUCAGCGGGUCGGAUGUUAGCCGCAGCCAGGCAACGGCCAAAAUUAUAAA
(((((-------....-----....((...((((((.(((((..((.......))..))))).))))))..)).(((.(....)))).....))))).. ( -24.00)
>DroEre_CAF1 14464 86 + 1
U--AG-------C----UGCAAACUGGCAACUGGCAACUGGCAAGCGAGAUCAGCGGGUCGGAUGUUAGCCGCAGCCAGGCAACGGCCAAAAUUAUAAA
.--.(-------(----((....(((((..((((((.(((((..((.......))..))))).)))))).....)))))....))))............ ( -28.90)
>DroYak_CAF1 14738 90 + 1
U--AG-------CAAACUGGCAACUGGGAACUGGCAACUGGCAAGCGAGAUCAGCGGGUCGGAUGUUAGCCGCAGCGAGGCAACGGCCAAAAUUAUAAA
.--..-------.....((((..(((((..((((((.(((((..((.......))..))))).)))))))).)))...(....).)))).......... ( -27.60)
>consensus
UAUAG_______CAUA_____UAUCGCAAACUGGCAACUGGCAAGCGAGAUCAGCGGGUCGGAUGUUAGCCGCAGCCAGGCAACGGCCAAAAUUAUAAA
...............................((((..(((((..((.......))..))))).((((.(((.......))))))))))).......... (-22.20 = -22.20 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:16 2006