| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,520,528 – 12,520,635 |
| Length | 107 |
| Max. P | 0.962369 |
| Location | 12,520,528 – 12,520,635 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 86.36 |
| Mean single sequence MFE | -39.80 |
| Consensus MFE | -25.90 |
| Energy contribution | -27.64 |
| Covariance contribution | 1.75 |
| Combinations/Pair | 1.00 |
| Mean z-score | -3.09 |
| Structure conservation index | 0.65 |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.923133 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12520528 107 + 23771897 GCCGCACUGGCAGCUGCUCUUUCCUGGCCAAUGGACACUG-------CCUACUGGACACUCUCCACUGGCCACCACCACCACUGUCGCCGCGUGGACUGCUUAUUGGCAUCUCC ((((....(((((...........((((((.((((.(.((-------((....)).)).).)))).))))))......((((.((....)))))).)))))...))))...... ( -35.60) >DroSec_CAF1 8780 101 + 1 GCCGCUCUGGCAGCUGCUCUUUCCUGGCCAGUGGACACUG-------CCUACUGGACACUCUCCACUGGCCACCACCACU------GCCGCGGGGACUGCUUAUUGGCAUCUCC .((((...(((((.((........(((((((((((.(.((-------((....)).)).).)))))))))))....))))------)))))))(((.((((....))))..))) ( -42.80) >DroSim_CAF1 8505 101 + 1 GCCGCUCUGGCAGCUGCUCUUUCCUGGCCAGUGGACACUG-------CCUACUGGACACUCUCCACUGGCCACCACCACU------GCCGCGGGGACUGCUUAUUGGCAUCUCC .((((...(((((.((........(((((((((((.(.((-------((....)).)).).)))))))))))....))))------)))))))(((.((((....))))..))) ( -42.80) >DroYak_CAF1 8645 105 + 1 ACCGCUCUGGCAGCUGCUCUUUCCUGGCCAAUGACCACUGGCCACUGUCCACUGGCCACUCUCCAGUGGCCAA---CACU------GCCGCGGGGACUACUUAUUGGCAUCUCC .((((...(((((.((........((((((........))))))........((((((((....)))))))).---))))------)))))))..................... ( -38.00) >consensus GCCGCUCUGGCAGCUGCUCUUUCCUGGCCAAUGGACACUG_______CCUACUGGACACUCUCCACUGGCCACCACCACU______GCCGCGGGGACUGCUUAUUGGCAUCUCC ((.((...(((....)))......(((((((((((..........................)))))))))))..............)).))(((((.((((....))))))))) (-25.90 = -27.64 + 1.75)
| Location | 12,520,528 – 12,520,635 |
|---|---|
| Length | 107 |
| Sequences | 4 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 86.36 |
| Mean single sequence MFE | -48.30 |
| Consensus MFE | -32.60 |
| Energy contribution | -33.66 |
| Covariance contribution | 1.06 |
| Combinations/Pair | 1.12 |
| Mean z-score | -3.41 |
| Structure conservation index | 0.68 |
| SVM decision value | 1.54 |
| SVM RNA-class probability | 0.962369 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12520528 107 - 23771897 GGAGAUGCCAAUAAGCAGUCCACGCGGCGACAGUGGUGGUGGUGGCCAGUGGAGAGUGUCCAGUAGG-------CAGUGUCCAUUGGCCAGGAAAGAGCAGCUGCCAGUGCGGC (((..(((......))).)))....(.((.((.(((..((.((((((((((((.(.((((.....))-------)).).))))))))))........)).))..))).)))).) ( -45.80) >DroSec_CAF1 8780 101 - 1 GGAGAUGCCAAUAAGCAGUCCCCGCGGC------AGUGGUGGUGGCCAGUGGAGAGUGUCCAGUAGG-------CAGUGUCCACUGGCCAGGAAAGAGCAGCUGCCAGAGCGGC (((..(((......))).)))(((((((------(((.((..(((((((((((.(.((((.....))-------)).).))))))))))).......)).))))))...)))). ( -50.10) >DroSim_CAF1 8505 101 - 1 GGAGAUGCCAAUAAGCAGUCCCCGCGGC------AGUGGUGGUGGCCAGUGGAGAGUGUCCAGUAGG-------CAGUGUCCACUGGCCAGGAAAGAGCAGCUGCCAGAGCGGC (((..(((......))).)))(((((((------(((.((..(((((((((((.(.((((.....))-------)).).))))))))))).......)).))))))...)))). ( -50.10) >DroYak_CAF1 8645 105 - 1 GGAGAUGCCAAUAAGUAGUCCCCGCGGC------AGUG---UUGGCCACUGGAGAGUGGCCAGUGGACAGUGGCCAGUGGUCAUUGGCCAGGAAAGAGCAGCUGCCAGAGCGGU (((..(((......))).)))(((((((------(((.---(((((((((....)))))))))(((.((((((((...)))))))).)))..........))))))...)))). ( -47.20) >consensus GGAGAUGCCAAUAAGCAGUCCCCGCGGC______AGUGGUGGUGGCCAGUGGAGAGUGUCCAGUAGG_______CAGUGUCCACUGGCCAGGAAAGAGCAGCUGCCAGAGCGGC ((.....)).....((..(((((((.((.......)).))))(((((((((((.(.((................)).).))))))))))))))....)).(((((....))))) (-32.60 = -33.66 + 1.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:14 2006