Locus 4273

Sequence ID 3L_DroMel_CAF1
Location 12,520,393 – 12,520,497
Length 104
Max. P 0.619994
window6602

overview

Window 2

Location 12,520,393 – 12,520,497
Length 104
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 85.37
Mean single sequence MFE -27.45
Consensus MFE -21.65
Energy contribution -21.32
Covariance contribution -0.33
Combinations/Pair 1.19
Mean z-score -1.95
Structure conservation index 0.79
SVM decision value 0.18
SVM RNA-class probability 0.619994
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12520393 104 - 23771897
------CUAAGUCAGCCGCACGCAUAAUAACCACGAUUAAAGCAAACAAGGCUCAUUGUCGGUUAAAUGACAAGUUUUGACAACUUGUGAAACGACAAGUGGCCAGCGAU----------
------....((..(((((........((((((((((...(((.......))).))))).)))))..(.(((((((.....))))))).)........)))))..))...---------- ( -26.20)
>DroVir_CAF1 9095 104 - 1
------CUUAUUCGGGCGAACGCAUAAUAACCACGAUUAAAGCAAACAAGGCUCAUUGUCGGUUAAAUGACAAGUUUUGACAACUUGUGAAACGACAAGUGGUCACUGCC----------
------........(((((((.(((..((((((((((...(((.......))).))))).))))).)))....))))((((.((((((......)))))).))))..)))---------- ( -25.80)
>DroPse_CAF1 8423 104 - 1
------CCAAGUCAGCCGCACGCAUAAUAACCACGAUUAAAGCCAACGAGGCUCAUUGUCGGUUAAAUGACAAGUUUUGACAACUUGUGAAACGACAAGUGGUCAGCGGC----------
------........(((((..((((..((((((((((...((((.....)))).))))).))))).))).)......((((.((((((......)))))).)))))))))---------- ( -34.40)
>DroGri_CAF1 9201 103 - 1
------CUUAUUCAGUCGAAUGCAUAAUAACCACGAUUAAAGCAAACAAGGCUCAUUGUCGGUUAAAUGACAAGUUUUGACAACUUGUGAAACGACAAGUGGUCAGUGG-----------
------..(((((....)))))........((((......(((.......)))..((((((......))))))....((((.((((((......)))))).))))))))----------- ( -23.40)
>DroWil_CAF1 12476 120 - 1
AUCAUUCCAAACCUCCUGAACGCAUAAUAACUACGAUUAAAGCAAACAAGGCUUAUUGUAGGUUAAAUGACAAGUUUUGACAACUUGUGAAACGACAAGUGGUCAGCGGCUGUUUGACUC
.......(((((..((.((((.(((.....(((((((..((((.......))))))))))).....)))....))))((((.((((((......)))))).))))..))..))))).... ( -29.10)
>DroMoj_CAF1 9817 100 - 1
----------UUCGGGCGAACGCAUAAUAACCACGAUUAAAGCAAACAAGGCUCAUUGUCGGUUAAAUGACAAGUUUUGACAACUUGUGAAACGACAAGUGGUCACUGCC----------
----------....(((((((.(((..((((((((((...(((.......))).))))).))))).)))....))))((((.((((((......)))))).))))..)))---------- ( -25.80)
>consensus
______CUAAUUCAGCCGAACGCAUAAUAACCACGAUUAAAGCAAACAAGGCUCAUUGUCGGUUAAAUGACAAGUUUUGACAACUUGUGAAACGACAAGUGGUCAGCGGC__________
..............((((...((((..((((((((((...(((.......))).))))).))))).))).)......((((.((((((......)))))).)))).)))).......... (-21.65 = -21.32 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:12 2006