Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 12,510,192 – 12,510,300 |
Length | 108 |
Max. P | 0.538935 |
Location | 12,510,192 – 12,510,300 |
---|---|
Length | 108 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 84.32 |
Mean single sequence MFE | -28.68 |
Consensus MFE | -17.83 |
Energy contribution | -17.37 |
Covariance contribution | -0.47 |
Combinations/Pair | 1.42 |
Mean z-score | -2.79 |
Structure conservation index | 0.62 |
SVM decision value | 0.01 |
SVM RNA-class probability | 0.538935 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12510192 108 + 23771897 AUUCUAAAUCUUACUAUCUUGACUCAAGACAAACAUAUCCGUGUGUGUUACUCCUCUGUCCGCCUCCUUCUUCAUGGCGGCCCUCGAGUAACCGCCCCACACGUAGAU ..((((..........(((((...)))))..........((((((.(((((((....(.(((((...........))))))....))))))).....)))))))))). ( -28.20) >DroVir_CAF1 1243 107 + 1 AGUG-GUUGCUUACUGUCCACAUCGAGCGCAAACAUGUCCGUGUGCGUGAUGCCCCGAUCCAGAUCCUUCUUCAUCGAGGUUCUCGCGUAGCCGCCCCAAACGUAGAU .(((-(((((........((((.((..((......))..)))))).((((.(((.((((..(((....)))..)))).)))..))))))))))))............. ( -31.40) >DroSec_CAF1 730 108 + 1 AUUCUAGCUCUUACUAUCUUGACUCAGGACAAACAUAUCCGUGUGUGUUACUCCUCUGUCCGCCUCCUUCUUCAUGGAGGCCCGCGAGUAACCGCCCCACACGUAGAU ..((((..........(((((...)))))..........((((((.(((((((....((..((((((........))))))..))))))))).....)))))))))). ( -30.40) >DroSim_CAF1 729 108 + 1 AUUCUAACUCUUACUAUCUUGACUCAGGACAAACAUAUCCGUGUGUGUUACUCCUCUGUCCGCCUCCUUCUUCAUGGAGGCCCGCGAGUAACCGCCCCAAACGUAGAU ..((((..............(((..((((..(((((((....)))))))..))))..))).((((((........))))))..(((......)))........)))). ( -28.90) >DroEre_CAF1 729 108 + 1 AGUUUUAAUCUUACUGUCUUGACUCAAGACAAACAUAUCCGUGUGUGUUACUCCUCUAUCCGCUUCCUUCUUCAUGGAGGCCCUCGAGUAACCUCCCCAAACAUAGAU .((((.........(((((((...))))))).(((((....)))))(((((((........((((((........))))))....)))))))......))))...... ( -24.90) >DroYak_CAF1 729 108 + 1 ACUUUCAAUCGUACUGUCUUGACUCAGGACAAACAUAUCCGUGUGCGUUACUCCUCUAUCCGCCUCCUUCUUCAUGGAGGCCCUCGAGUAACCUCCCCAAACAUAGAU .......((((((((((((((...))))))).((......))))))(((((((........((((((........))))))....))))))).............))) ( -28.30) >consensus AUUCUAAAUCUUACUAUCUUGACUCAGGACAAACAUAUCCGUGUGUGUUACUCCUCUAUCCGCCUCCUUCUUCAUGGAGGCCCUCGAGUAACCGCCCCAAACGUAGAU .............((((((((...))))).............(((.(((((((........((((((........))))))....))))))))))........))).. (-17.83 = -17.37 + -0.47)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:10 2006