| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,507,505 – 12,507,611 |
| Length | 106 |
| Max. P | 0.630705 |
| Location | 12,507,505 – 12,507,611 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 77.03 |
| Mean single sequence MFE | -23.30 |
| Consensus MFE | -14.95 |
| Energy contribution | -14.98 |
| Covariance contribution | 0.03 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.20 |
| SVM RNA-class probability | 0.630705 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12507505 106 - 23771897 GC----AGAUAGAUCUUUUUAGUUAAUACACUUAUUAAUAUUCUUAUAUCCCGAAUAUGGCUAGCAGCCUCGUUUUUGUGGCUCUAGUCGGCGCCUUAUGUUUUACGCUC ((----...............(((((((....))))))).....((((...((....(((((((.((((.((....)).))))))))))).))...))))......)).. ( -21.80) >DroSec_CAF1 2799 106 - 1 GA----GGAAAGAUCUUUUUAGUUAAUACACUUAUUAAUAUACUUAUAUCGCGAAUAUGGCUAGCAGCCUCGUUUUUGUGGCUCUAGUCGGAGCCUUAUGCUUUACGCUC ((----(((....)))))...(((((((....)))))))...........(((.....((((((.((((.((....)).))))))))))(((((.....))))).))).. ( -25.80) >DroSim_CAF1 2799 106 - 1 GG----GGAAAGAUCUUUUUAGUUAAUUCACUUAUUAAUAUACUUAUAUCGCGAAUAUGGCUAGCAGCCUCGUUUUUGUGGCUCUAGUCGGAGCCUUAUGCUUUACGCUC ..----.....(((.......((((((......))))))........)))(((.....((((((.((((.((....)).))))))))))(((((.....))))).))).. ( -24.66) >DroEre_CAF1 2880 97 - 1 GU----AG----AUCUUUUUAGUCGAUAUUAUUAU-----UACUUAUAUCCCGAAUAUGGCUAGAAGCCUCGUUUUUGCGGCUCUAGUCGGCGCUUUAUGUUUUACGCUC ((----((----(........((((((((......-----.....)))))........(((((((.(((.((....)).))))))))))))).........))))).... ( -22.73) >DroYak_CAF1 2809 94 - 1 GU----AGAUUGAUCUUUUUAGUUAAUA------------UACUUAUAUUCCGAAUAUGGCUAGGAGCCUCGUUUUUGUGGCUCUAGUCGGCGCUUUAUGUUUUACACUC ((----(.((((((.......)))))).------------))).((((...((....(((((((.((((.((....)).))))))))))).))...)))).......... ( -20.80) >DroAna_CAF1 2863 98 - 1 AUAUUGGCCUGGCCCUUUUUAGAUAAGU-------UAAUA-----GUUCGCUAAAAAUGGCUAGAGACCUCGUUUUUGUGGCUCUAGUCGGCGCUUUAUGUUUUACCCUC ((((.(((...(((.(((((((..((.(-------....)-----.))..))))))).((((((((.((.((....)).))))))))))))))))..))))......... ( -24.00) >consensus GU____AGAUAGAUCUUUUUAGUUAAUACACUUAUUAAUAUACUUAUAUCCCGAAUAUGGCUAGCAGCCUCGUUUUUGUGGCUCUAGUCGGCGCCUUAUGUUUUACGCUC .........................................................(((((((.((((.((....)).))))))))))).................... (-14.95 = -14.98 + 0.03)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:07 2006