Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 12,504,021 – 12,504,123 |
Length | 102 |
Max. P | 0.954075 |
Location | 12,504,021 – 12,504,123 |
---|---|
Length | 102 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 89.63 |
Mean single sequence MFE | -38.56 |
Consensus MFE | -33.46 |
Energy contribution | -33.14 |
Covariance contribution | -0.32 |
Combinations/Pair | 1.13 |
Mean z-score | -1.78 |
Structure conservation index | 0.87 |
SVM decision value | 1.44 |
SVM RNA-class probability | 0.954075 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12504021 102 + 23771897 GGUGAAAGGUUCCGUCCGGUUUUUCCGGACUUUCGAAAUUUAACAAUUCCACAGAUGUGUGCAGGCGGGUGUGACCGUCGUUUCGCGGCACUGUUCCACCCU---------- ((((((.(((.((((((((.....))))))...((((((..........((((....))))..(((((......))))))))))).)).))).)).))))..---------- ( -35.20) >DroSec_CAF1 29619 102 + 1 GGUGAAAGGUUCCGUCCGGUUUUUCCGGACUUUCGAAAUUAACCAAUUCCACAGAUGUGAGCAGGCGGGUGUGACCGUCGUUUCGCGGCACCGUUCCACCCU---------- ((((((.(((.((((((((.....))))))...((((((..........(((....)))....(((((......))))))))))).)).))).)).))))..---------- ( -37.20) >DroSim_CAF1 29297 102 + 1 GGUGAAAGGUUCCGUCCGGUUUUUCCGGACUUUCGAAAUUAACCAAUUCCACAGAUGUGUGCAGGCGGGUGUGACCGUCGUUUCGCGGCACCGUUCCACCCU---------- ((((((.(((.((((((((.....))))))...((((((..........((((....))))..(((((......))))))))))).)).))).)).))))..---------- ( -37.00) >DroEre_CAF1 30623 112 + 1 GGUGAAAGGUUCCGUCCGGUUUUUCCGGAUUUUCGAAAUUUACCAAUUCCACAGAUGUGUGCUGGUGGGUGUGACCGUCGGUUCGCGGCACCGUUACACCCUGCUAAGCGCA ((((((...(((.((((((.....))))))....))).)))))).............((((((((((((((((((.((((.....))))...))))))))).))).)))))) ( -43.10) >DroYak_CAF1 29999 112 + 1 GGUGAAAGGUUCCGUCCGGUUUUUCCGGAUUUUCGAAAUUUACCAAUUCCACAGAUGUGAGCUGGCGGGUGUGACCGUUGGUUCGCGGCACCGUUACACCCUACUAAGCGCA ((((((.(((.((((((((.....))))))..........................((((((..((((......))))..)))))))).))).)).))))............ ( -40.30) >consensus GGUGAAAGGUUCCGUCCGGUUUUUCCGGACUUUCGAAAUUUACCAAUUCCACAGAUGUGUGCAGGCGGGUGUGACCGUCGUUUCGCGGCACCGUUCCACCCU__________ ((((((.(((.((((((((.....))))))...((((((..........(((....)))....(((((......))))))))))).)).))).)).))))............ (-33.46 = -33.14 + -0.32)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:06 2006