| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,499,702 – 12,499,818 |
| Length | 116 |
| Max. P | 0.977608 |
| Location | 12,499,702 – 12,499,818 |
|---|---|
| Length | 116 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.09 |
| Mean single sequence MFE | -26.87 |
| Consensus MFE | -20.11 |
| Energy contribution | -21.00 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.75 |
| SVM decision value | 1.80 |
| SVM RNA-class probability | 0.977608 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12499702 116 + 23771897 CU----AUUUAAAGUUGGAACAGCUACAUGCUAACUCACUGGCUAAGCAUUUCUAGUUCACUUCAUACACUGAGUUUUAAUGCUUCGGAAAAGGCGAAAGCCAAGUUAUACACUUUAAGA ..----.(((((((((((((..(((....((((......))))..)))..)))))((..((((......((((((......)).))))....(((....)))))))...)))))))))). ( -27.00) >DroSec_CAF1 25347 97 + 1 CU----AUUUAAAGGUGGAGCAGCUACAUACUAACUCACUCACUA-------------------AUACACUGAGUUUUAAUGCUUCGGAAAUGGCGAAAGCCAAGUUAGACACUUUAAGA ..----.(((((((((((.....))))...((((((.........-------------------.....((((((......)).))))...((((....))))))))))...))))))). ( -25.40) >DroSim_CAF1 25028 120 + 1 CUGGAGACUAUAAGGUGGAGCAACUACAUACUAACUACCUCACUAAGAAAUUGUAGUUCCCUUCAUACACUGGGUUUUAAUGCUUCGGAAAUGGCGAAAGCCAAGUUAGACACUUUAAGA ..(....)..((((((((((((((((((.......................)))))).(((..........)))......)))))......((((....)))).......)))))))... ( -28.20) >consensus CU____AUUUAAAGGUGGAGCAGCUACAUACUAACUCACUCACUAAG_A_UU_UAGUUC_CUUCAUACACUGAGUUUUAAUGCUUCGGAAAUGGCGAAAGCCAAGUUAGACACUUUAAGA .......(((((((((((.....))))...((((((.................................((((((......)).))))....(((....))).))))))...))))))). (-20.11 = -21.00 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:04 2006