Locus 4265

Sequence ID 3L_DroMel_CAF1
Location 12,497,258 – 12,497,378
Length 120
Max. P 0.844284
window6594

overview

Window 4

Location 12,497,258 – 12,497,378
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 80.94
Mean single sequence MFE -39.87
Consensus MFE -26.69
Energy contribution -25.95
Covariance contribution -0.74
Combinations/Pair 1.47
Mean z-score -2.12
Structure conservation index 0.67
SVM decision value 0.76
SVM RNA-class probability 0.844284
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12497258 120 - 23771897
AGCUACUGGGCGCCAUUAUAGACAUGGAGAACCUAUUCAUGUCCAUGCAGCGCGUCGAGGACGAGGACACCAAGAAGGUGUACCAGUACCUCUUCCGUUUGCUGCGCCAGUGCGUCCUCA
.......(((((((......((((((((.......))))))))...((((((((..((((((..(((((((.....))))).)).)).))))...)))..)))))....).))))))... ( -47.20)
>DroVir_CAF1 34745 120 - 1
ACCUCUUGGGCGCAAUCAUCGAUAUGGAAAACCUAUUUAUGUCCAUGCAGCGCGUAGAGGACGAGGACACUAAAAAAGUGUAUUUGUAUUUGUUUAGGCUGCUCCGUCAAUGCGUCCUAA
.(((((.(.((((...(((.((((((((.......)))))))).)))..)))).))))))(((((.(((((.....))))).)))))......(((((.(((.........))).))))) ( -36.30)
>DroGri_CAF1 25275 120 - 1
AACUGUUGGGCGCCAUCAUUGACAUGGAAAACUUGUUUAUGUCCAUGCAACGUGUCGAGGACGAUGACACCAAGAAGGUGUAUUUGUAUCUGUUUAGGUUGCUGCGUCAAUGCGUCCUAA
.......((((((....(((((((((((.............)))))(((((.((...(((((((..(((((.....)))))..)))).)))...)).)))))...))))))))))))... ( -37.62)
>DroWil_CAF1 25422 120 - 1
AACUAUUGGGUGCAAUUAUCGAUAUGGAGAAUCUGUUCAUGUCCAUGCAACGGGUAGAGGACGAAGAUACCAAGAAGGUAUAUUUGUACUUGUUCCGAUUAUUGCGCCAAUGCGUUCUGA
(((((((((.((((((.(((((((((((.......))))))))........(((..(((.(((((.(((((.....))))).))))).)))..)))))).)))))))))))).))).... ( -36.90)
>DroMoj_CAF1 24239 120 - 1
AACUAUUAGGCGCCAUCAUUGACAUGGAAAAUCUAUUCAUGUCCAUGCAGCGCGUUGAGGAUGAGGACACAAAGAAGGUUUACUUGUAUCUGUUCAGGUUACUGCGACAGUGUGUGCUCA
..((...(.((((...(((.((((((((.......)))))))).)))..)))).)..))..((((.(((((.(.(((.....))).)..((((((((....))).)))))))))).)))) ( -38.80)
>DroAna_CAF1 21084 120 - 1
AGCUGCUGGGUGCCAUUAUCGACAUGGAGAACCUGUUCAUGUCGAUGCAGCGCGUUGAGGACGAGGACACCAAGAAGGUCUACUUGUAUCUGUUUCGGCUGCUCCGCCAGUGCGUCCUAA
.((.(((((........(((((((((((.......)))))))))))(((((.((...((((((((...(((.....)))...))))).)))....)))))))....)))))))....... ( -42.40)
>consensus
AACUAUUGGGCGCCAUCAUCGACAUGGAAAACCUAUUCAUGUCCAUGCAGCGCGUAGAGGACGAGGACACCAAGAAGGUGUACUUGUAUCUGUUCAGGUUGCUGCGCCAAUGCGUCCUAA
.......((((((.......((((((((.......))))))))...(((((......((((((((.(((((.....))))).))))).)))......))))).........))))))... (-26.69 = -25.95 +  -0.74)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:03 2006