| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,496,193 – 12,496,313 |
| Length | 120 |
| Max. P | 0.500000 |
| Location | 12,496,193 – 12,496,313 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.50 |
| Mean single sequence MFE | -35.26 |
| Consensus MFE | -23.26 |
| Energy contribution | -23.44 |
| Covariance contribution | 0.17 |
| Combinations/Pair | 1.52 |
| Mean z-score | -1.38 |
| Structure conservation index | 0.66 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12496193 120 - 23771897 AGCUCGUAUUUGCCUAUCAGCUACCCGAGAUGCCGCGCGAGUACAUCAGCCAGUUGGUUUUCGACACCAAGCACAAAACACUGGCGCUCAUCAAGGAAAACCAACCCAUCGGCGGCAUCU ((((.(((......))).)))).....(((((((((.(((((......))..((((((((((.......(((.((......))..))).......))))))))))...)))))))))))) ( -38.04) >DroVir_CAF1 33615 120 - 1 AGCUUGUGUUUGCGCAUCAGUUGCCCGAAAUGCCACGUGAAUACAUAAGCCAGCUGGUUUUUGACACCAAGCACAAGACCUUGGCGCUAAUCAAGGAGAACCAACCAAUUGGAGGAAUAU ..((((((((((.(..((((..(((.(....((...(((....)))..))...).)))..))))..))))))))))).((((((......))))))....((((....))))........ ( -30.80) >DroGri_CAF1 24183 120 - 1 AGCUGGUGUUUGCGCAUCAGCUGCCGGAGAUGCCGCGGGAAUAUAUCAGUCAGCUGGUUUUCGAUACCAAGCAUAAAACGCUGGCACUCAUCAAGGAGAAUCAGCCAAUUGGGGGCAUUU (((((((((....)))))))))(((.(((.(((((((.((.....)).....((((((.......))).)))......))).)))))))...............((....)).))).... ( -38.30) >DroWil_CAF1 24305 120 - 1 AAUUGGUCUUUGCCUAUCAGUUGCCCGAAAUGCCGCGUGAAUAUAUCAGUCAAUUGGUGUUCGAUACCAAACACAAGACAUUGGCCUUAAUCAAAGAGAACCAGCCAAUUGGUGGCAUUU ....(((..(((.....)))..)))..(((((((((.(((.....)))..((((((((((((....((((..........)))).(((.....))).))))..))))))))))))))))) ( -29.20) >DroMoj_CAF1 23152 120 - 1 AGCUGGUAUUUGCCUAUCAGCUGCCCGAGAUGCCGCGUGAAUACAUAAGCCAGCUUGUCUUUGACACCAAGCACAAAACCCUGGCACUGAUAAAGGAAAAUCAGCCCAUAGGCGGCAUAU ((((((((......)))))))).......(((((((.((.........(((((.((((.((((....)))).))))....))))).(((((........)))))....)).))))))).. ( -38.60) >DroAna_CAF1 20019 120 - 1 AACUGGUGUUUGCGUACCAACUGCCCGAGAUGCCACGCGAGUACAUCAGCCAGCUGGUCUUCGACACCAAGCACAAGACCCUGGCCCUGAUCAAGGAGAAUCAGCCCAUCGGUGGCAUUU ...(((((......)))))........(((((((((.(((........(((((..((((((.............))))))))))).(((((........)))))....)))))))))))) ( -36.62) >consensus AGCUGGUGUUUGCCUAUCAGCUGCCCGAGAUGCCGCGUGAAUACAUCAGCCAGCUGGUUUUCGACACCAAGCACAAAACCCUGGCACUAAUCAAGGAGAACCAGCCAAUUGGCGGCAUUU ((((((((......)))))))).....(((((((((............(((((...(((((.............))))).))))).........((........)).....))))))))) (-23.26 = -23.44 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:18:02 2006