| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,472,650 – 12,472,753 |
| Length | 103 |
| Max. P | 0.665907 |
| Location | 12,472,650 – 12,472,753 |
|---|---|
| Length | 103 |
| Sequences | 6 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 79.32 |
| Mean single sequence MFE | -29.50 |
| Consensus MFE | -16.05 |
| Energy contribution | -16.97 |
| Covariance contribution | 0.92 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.28 |
| SVM RNA-class probability | 0.665907 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12472650 103 - 23771897 GGCUGUUAUUGCCAAAAAAUAUGGCAAGACUACACCGCAGAUUGUGCUGCGUUACCUGGUAAUUGA--GGCAUCAACCUGACCUCAGCGACAGCAUCUAAUUAAA-- .((((((.((((((.......)))))).((((...(((((......))))).....))))..((((--((((......)).)))))).))))))...........-- ( -30.30) >DroSec_CAF1 27169 101 - 1 GGCUGUUAUUGCCAAAAAAUAUGGCAAGACUGGACCGCAGAUUGCGCUGCGUUAUCUGGUAACUGA--GGCAUCAAUCUGACCUCAGCGAUAGCAUCUAAUUA---- .((((((.((((((.......)))))).((..((.(((((......)))))...))..))..((((--((((......)).)))))).)))))).........---- ( -34.60) >DroSim_CAF1 28282 101 - 1 GGCUGUUAUUGCCAAAAAGUAUGGCAAGACUGGACCGCAGAUUGCGCUGCGUUAUCUGGUAAUUGA--GGCAUCAAUCUGACCUCAGCGAUAGCAUCUAAUUA---- .((((((.((((((.......)))))).((..((.(((((......)))))...))..))..((((--((((......)).)))))).)))))).........---- ( -32.50) >DroEre_CAF1 27212 100 - 1 GGCUGUAAUUGCCAAAAAAUAUGGCAAGACUGCACCGCAGGUUGUCCUGCGUUACCUGGUAAUUGA--GUACUUA-GCCGACCUCAGCGAUAGCAUCUAAUUU---- ((((((((((((((.........(((....)))..((((((....)))))).....))))))))).--.....))-))).......((....)).........---- ( -28.80) >DroYak_CAF1 28267 102 - 1 GGCGGUUAUUGCCAAGAAAUAUGGCAAGACUGCACCGCAGAUUGUUCUGCGUUACUUGGUAAUUGCCUGGAAUUA-GCCGACCUCAGCGAUAGCAUCUAAUUU---- ((((((.(((((((((.......(((....)))..((((((....))))))...))))))))).))).((.....-.))).))...((....)).........---- ( -31.70) >DroAna_CAF1 24945 103 - 1 GACGGCCAUUGCCAAAAAAUACGGAAAGACCACGCCGCAAGUGGUGCUGCGCUACUUGGUAAUUA----GAAUUAGUCUUAAAUCUACUAAAUUAUGUUAAUAUUUU ((((((....)))......(((((.....))......(((((((((...))))))))))))....----......)))............................. ( -19.10) >consensus GGCUGUUAUUGCCAAAAAAUAUGGCAAGACUGCACCGCAGAUUGUGCUGCGUUACCUGGUAAUUGA__GGAAUCAAUCUGACCUCAGCGAUAGCAUCUAAUUA____ .((((((.((((((.......)))))).((((...(((((......))))).....))))............................))))))............. (-16.05 = -16.97 + 0.92)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:55 2006