Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 1,237,578 – 1,237,675 |
Length | 97 |
Max. P | 0.625989 |
Location | 1,237,578 – 1,237,675 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 80.79 |
Mean single sequence MFE | -22.30 |
Consensus MFE | -16.23 |
Energy contribution | -16.12 |
Covariance contribution | -0.11 |
Combinations/Pair | 1.17 |
Mean z-score | -1.32 |
Structure conservation index | 0.73 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.625989 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 1237578 97 + 23771897 CACUAACCCAAAUUCAAUUUUCAUUUCAGCGCGAAAACGAGCUGUGCGGAAAUUGCGCCACUUACUGGUGAAGUACAAUAUCCAAAUUGAGAAUUGA .............((((((((((...((((.((....)).))))...(((.((((..(((((....))))..)..)))).)))....)))))))))) ( -26.30) >DroSec_CAF1 16483 97 + 1 CACUAACCCGAAUUCGGUUUCCUUUUCAGCGCGAAAACGAGCUGUGCGGAAAUUGCGCCACUUACUGGUGAAGUACAAUAUCCAAAUUGAGAAUUGA ..........((((((((((((....((((.((....)).))))...))))))).(((((.....))))).....((((......)))).))))).. ( -22.30) >DroEre_CAF1 16716 96 + 1 UAUUAACUCGAUUU-UGCUUACUUUUUAGCGCGAAAACGGGCUGUGCGGAAAUUGCGCCACUUACUGGUGAAGUACAAUAUCCAAAUUGAGAAUUGA ......((((((((-.((........((((.((....)).)))).))(((.((((..(((((....))))..)..)))).)))))))))))...... ( -24.30) >DroWil_CAF1 14575 91 + 1 CU-U----AUU-UUCUUUUUGGUUUUUAGCGCGGAAACGAGCUAUUAGAAAAUUGCGCCAUUUACUGGUUAAGUACAACAUCCAAAUUGACUAAUUA ..-.----...-.((..(((((....((((.((....)).)))).........(((((((.....))))...)))......)))))..))....... ( -17.80) >DroYak_CAF1 16719 96 + 1 UGUUAACUGGAUUU-UGCUUACUUUUCAGCGCGAAAACGGGCUGUGCGGAAAUUGCGCCACUUACUGGUGAAGUACAAUAUCCAAAUUGAGAAUUGA ......((.(((((-.((........((((.((....)).)))).))(((.((((..(((((....))))..)..)))).)))))))).))...... ( -22.70) >DroAna_CAF1 14425 88 + 1 --------CGUUUU-UAUUAAUAUUUUAGCGCGUAGACGGGCUAUACGGAAAUUGCGCCACUUACUGGUGAAGUACAAUAUCCAAAUUGAGAAUUGA --------.(((((-((.........((((.((....)).))))...(((.((((..(((((....))))..)..)))).)))....)))))))... ( -20.40) >consensus CA_UAAC_CGAUUU_UGUUUACUUUUCAGCGCGAAAACGAGCUGUGCGGAAAUUGCGCCACUUACUGGUGAAGUACAAUAUCCAAAUUGAGAAUUGA ..........................((((.((....)).))))...(((.((((..(((((....))))..)..)))).))).............. (-16.23 = -16.12 + -0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:41:32 2006