Locus 4259

Sequence ID 3L_DroMel_CAF1
Location 12,469,681 – 12,469,777
Length 96
Max. P 0.594384
window6585

overview

Window 5

Location 12,469,681 – 12,469,777
Length 96
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 91.10
Mean single sequence MFE -27.33
Consensus MFE -21.97
Energy contribution -22.75
Covariance contribution 0.78
Combinations/Pair 1.18
Mean z-score -2.20
Structure conservation index 0.80
SVM decision value 0.12
SVM RNA-class probability 0.594384
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12469681 96 + 23771897
UUCGAAUGGGCAAACAGUUGAGUUUACGAUUUGGCGGCGAUUUGCAUCUGCCUUUCCGGAUUAUCAUGCAGAUUGCAUUUUGCCACAAUUACGACA
.((((((.((((((..((..((((...))))..)).(((((((((((...((.....))......)))))))))))..))))))...))).))).. ( -30.10)
>DroSec_CAF1 24129 96 + 1
UUCGAAUGGGCAAACAGUUGAGUUUACGAUUUGGCGGCGAUUUGCAUCUGCCUUUCCGGAUUAUCAUGCAGAUUGCAUUUUGCCACAAUUACGACA
.((((((.((((((..((..((((...))))..)).(((((((((((...((.....))......)))))))))))..))))))...))).))).. ( -30.10)
>DroSim_CAF1 25245 96 + 1
UUCGAAUGGGCAAACAGUUGAGUUUACGAUUUGGCGGCGAUUUGCAUCUGCCUUUCCGGAUUAUCAUGCAGAUUGCAUUUUGCCACAAUUACGACA
.((((((.((((((..((..((((...))))..)).(((((((((((...((.....))......)))))))))))..))))))...))).))).. ( -30.10)
>DroEre_CAF1 24127 93 + 1
UACGAAUGGGCAAACAGUUGAAUUUACGACUCGG---CGAUUUGCAUCUGCCUUUCCGGAUUAUCAUGCAGAUUGCAUUUUGCCACAAUUACGACA
..(((((.((((((((((((......))))).)(---((((((((((...((.....))......)))))))))))..))))))...))).))... ( -27.50)
>DroYak_CAF1 25069 96 + 1
UUUGAAUGGGCAAACAGUUGAAUUUACGACUCGGCUGCGAUUUGCAUCUGCCUUUCCGGAUUAUCAUGCAGAUUGCAUUUUGCCACAAUUACGACA
..(((.((((((((.((((((.........))))))(((((((((((...((.....))......)))))))))))..)))))).)).)))..... ( -27.20)
>DroAna_CAF1 22047 94 + 1
UUCGAAUAGACGACCCUACGAGUUUACGAUCCGU--AAGAUUUGCAUUUGCCUUUCCGGAUUAUCAUGCAGAUUGCAUUUUGCCACAAUUACGGCA
.(((..(((((..........)))))))).((((--(((((((((((...((.....))......)))))))))((.....)).....)))))).. ( -19.00)
>consensus
UUCGAAUGGGCAAACAGUUGAGUUUACGAUUCGGCGGCGAUUUGCAUCUGCCUUUCCGGAUUAUCAUGCAGAUUGCAUUUUGCCACAAUUACGACA
.((((((.((((((..((((((((...)))))))).(((((((((((...((.....))......)))))))))))..))))))...))).))).. (-21.97 = -22.75 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:54 2006