| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,466,921 – 12,467,041 |
| Length | 120 |
| Max. P | 0.695473 |
| Location | 12,466,921 – 12,467,041 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 81.28 |
| Mean single sequence MFE | -43.78 |
| Consensus MFE | -28.09 |
| Energy contribution | -28.68 |
| Covariance contribution | 0.59 |
| Combinations/Pair | 1.31 |
| Mean z-score | -1.85 |
| Structure conservation index | 0.64 |
| SVM decision value | 0.34 |
| SVM RNA-class probability | 0.695473 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12466921 120 + 23771897 UGGUCAGAUAGCGCUCGAGCAUUUCGCAGGCGGAUGGUACGGAGAACUUUUUGGUGCGCAAAAAACGCAGCAGGAAGACGGUAUCGGUGCGGCACUUGCGGAUAUGCGGAUGCUUCUCGA ...(((((.((((.((..(((((((((((((.(.((((((.(....(((((((.((((.......)))).))))))).).))))))...).)).).)))))).)))).))))))))).)) ( -41.40) >DroVir_CAF1 17348 120 + 1 UGGUCAAAUAGCGCUCGAGCAUCUCGCAGGCGGCGGGCACCGAGAACUUCUUGGUGCGCAGAAAGCGCAGCAGGAAUAUGGCAUCCGUGCGGCACUUCUUGAUGUGCGGAUGCUUGGCAA ..(((((...(((((...((...((((.....))))((((((((.....))))))))))....)))))............(((((((..((.((.....)).))..)))))))))))).. ( -50.40) >DroGri_CAF1 18546 120 + 1 GCGUCAAAUAACGCUCGAGCAUUUCACAUGCCGAUGGUACGGAAAAUUUCCGGCAACGCAGAAAACGCAGCAAGAAAAUGGCAUCAGUUCGGCACUUCUUGAUGUGUGGAUGCUUUGCAA ((((......))))(((.((((.....))))))).....((((.....))))((((.(((....(((((.((((((..((.(........).)).)))))).)))))...))).)))).. ( -36.60) >DroWil_CAF1 20160 120 + 1 UGGUCAAAUAACGUUCAAGCAUCUCGCAGGCCGAUGGUACUGAAAACUUUUUCGUACGCAGAAAACGCAACAGGAAGACGGCAUCGGUACGGCAUUUCUUAAUAUGCGGAUGCUUGGCAA ............((.(((((((((((...(((((((((((.((((....))))))))((.......)).............))))))).))((((........))))))))))))))).. ( -35.30) >DroMoj_CAF1 17240 120 + 1 UGGUCAGAUAGCGCUCGAGCAUCUCGCAAGCUGCGGGCACUGAGAAUUUCUUGGUGCGCAGAAAACGCAGCAGGAAGAUCGCAUCAGUGCGACACUUCUUGAUGUGCGGAUGCUUGGCAA ............((.((((((((.((((.((((((.((((..((.....))..)))).).(....))))))((((((.(((((....)))))..))))))....)))))))))))))).. ( -54.20) >DroAna_CAF1 19575 120 + 1 UGGUGAGGUAUCUUUCCAGCAUCUCGCAGGCGGCCGGCACGGAGAACUUCUUGGUGCGCAGAAAACGCAACAGGAAGACGGCAUCGGUGCGGCACUUCCGGAUGUGCGGAUGCUUGUCGA (((.(((....))).))).....(((((((((((((.(((.((...(((((((.((((.......)))).)))))))......)).)))))))...((((......)))))))))).))) ( -44.80) >consensus UGGUCAAAUAGCGCUCGAGCAUCUCGCAGGCGGAUGGCACGGAGAACUUCUUGGUGCGCAGAAAACGCAGCAGGAAGACGGCAUCGGUGCGGCACUUCUUGAUGUGCGGAUGCUUGGCAA ............((.((((((((.((((........((((.((...(((((((.((((.......)))).)))))))......)).))))....(.....)...)))))))))))))).. (-28.09 = -28.68 + 0.59)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:53 2006