Locus 4256

Sequence ID 3L_DroMel_CAF1
Location 12,463,798 – 12,463,900
Length 102
Max. P 0.538290
window6582

overview

Window 2

Location 12,463,798 – 12,463,900
Length 102
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 85.56
Mean single sequence MFE -35.75
Consensus MFE -24.80
Energy contribution -26.58
Covariance contribution 1.78
Combinations/Pair 1.19
Mean z-score -2.76
Structure conservation index 0.69
SVM decision value 0.01
SVM RNA-class probability 0.538290
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12463798 102 - 23771897
CUGCCCGGCCAACAUUCUGGCUCCAAUGGAGCAUCCCGGCACUCCGUAACUCUGGAGCCGGAGAUCGGAUUCCAGAUCACCAUUGACAAUCCAAAAAACAAC
......(((((......))))).((((((......(((((..((((......))))))))).((((........)))).))))))................. ( -30.70)
>DroSec_CAF1 18232 102 - 1
CUACCCGGCCAACACUCCGGCUCCAAUGGAGCAUCGCGGCACUCCGUAACUCUGGAGCCGGAGAUCGGAUUCCAGAUCACCAUUGACAAUCCGAAAAACACC
..............(((((((((((((((((..........)))))).....))))))))))).(((((((...(((....)))...)))))))........ ( -36.30)
>DroSim_CAF1 18455 102 - 1
CUGCCCGGCCAACACUCCGGCUCCAAUGGAGCAUCGCGGCACUCUGUAACACUGGAGCCGGAGAUCGGAUUCCAGAUCACCAUUGACAAUCCGAAAAACAGC
(((...........(((((((((((.((..(((...........)))..)).))))))))))).(((((((...(((....)))...)))))))....))). ( -35.60)
>DroEre_CAF1 17844 102 - 1
CUGCCCGGUCAGCACUCCGGCUCCAAUGGCGCAAACCGGCACUCCGUAACUCUGGAGCCGGAGAUCGGAUUCCAGAUCACAAUCGACAAUCCGAAAAGCAGU
((((..........(((((((((((((((.((......))...)))).....))))))))))).(((((((...(((....)))...)))))))...)))). ( -40.40)
>DroYak_CAF1 18269 102 - 1
CUGCCCGGUCAGCACUCCGGCUCCAAUGGAGCAUCCCGGCACUCCGUAACUCUGGAGCCAGAGAUCGGAUUCCAGAUCACCAUCGACAAUCCGAAGAACAGU
(((..(........(((.(((((((((((((..........)))))).....))))))).))).(((((((...(((....)))...))))))).)..))). ( -33.20)
>DroAna_CAF1 16487 102 - 1
UUGCCCGGUCAACAGUCGUCGGGAAAUGGCGCCUCCCGCCAUUCCGUGGCUCUGGAGCCGGAGAUCGGCUUCCAGAUCACCAUCGAGACCCCCAAGAACUCC
......((((....((((.(((((..(((((.....))))))))))))))((((((((((.....)))).))))))..........))))............ ( -38.30)
>consensus
CUGCCCGGCCAACACUCCGGCUCCAAUGGAGCAUCCCGGCACUCCGUAACUCUGGAGCCGGAGAUCGGAUUCCAGAUCACCAUCGACAAUCCGAAAAACAGC
..............(((((((((((((((((..........)))))).....))))))))))).(((((((...(((....)))...)))))))........ (-24.80 = -26.58 +   1.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:51 2006