| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 12,456,600 – 12,456,697 |
| Length | 97 |
| Max. P | 0.988106 |
| Location | 12,456,600 – 12,456,697 |
|---|---|
| Length | 97 |
| Sequences | 4 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 73.43 |
| Mean single sequence MFE | -36.35 |
| Consensus MFE | -19.75 |
| Energy contribution | -22.62 |
| Covariance contribution | 2.88 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.43 |
| Structure conservation index | 0.54 |
| SVM decision value | 2.11 |
| SVM RNA-class probability | 0.988106 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 12456600 97 - 23771897 UGGGCGGUGGGUGGUGGGAGGUGA---UCGAAUUUGUGGGCGAUUCACCUUGUUUGCGGAACUGGUAAACAAAUCAUAAUACUCACC----------GCUUACUCACCUG .(((.(((((((((((((.(((((---(((..(....)..))).)))))((((((((.......)))))))).........))))))----------)))))).).))). ( -39.40) >DroSec_CAF1 10943 87 - 1 UGGGCGGUGGGCGGUGGGUGGUUGUUUUCGAAUAGGUGGGCGAUUCACCUUGUUUCA-------------UAAUCAUAAUACUCGCC----------GCUUACUCACCUG .(((.(((((((((((((((..((.((..(((.((((((.....))))))...))).-------------.)).))...))))))))----------)))))).).))). ( -36.10) >DroSim_CAF1 10825 97 - 1 UGGGCGGUGGGCAGUGAGUGGUGG---UCGGAUGGGUGGGCGAUUCACCUUGUUUGCGGAACUGGUAAACAAAUCAUAAUACUCGCC----------GCUUACUCACCUG .....((((...((((((((((((---(...((((((((.....)))))((((((((.......))))))))..)))...)).))))----------))))))))))).. ( -35.90) >DroEre_CAF1 10412 99 - 1 UGGGCGGUGCUUGGUGGGUGGA-----------GGGUGGGCGAUCCACCUUGUUUGCGGAACUGGUAAACACAUCAUAAUACACGCUUUUGAGUGCCCCUUACUCACCUG .(((.((..((..(.(((((.(-----------((((((.....)))))))((((((.......))))))...........))).)).)..))..))))).......... ( -34.00) >consensus UGGGCGGUGGGCGGUGGGUGGUGG___UCGAAUGGGUGGGCGAUUCACCUUGUUUGCGGAACUGGUAAACAAAUCAUAAUACUCGCC__________GCUUACUCACCUG .(((.(((((((((((((((.............((((((.....))))))(((((((.......)))))))........))))))))..........)))))).).))). (-19.75 = -22.62 + 2.88)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:50 2006