Locus 4254

Sequence ID 3L_DroMel_CAF1
Location 12,455,223 – 12,455,315
Length 92
Max. P 0.634814
window6580

overview

Window 0

Location 12,455,223 – 12,455,315
Length 92
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 89.15
Mean single sequence MFE -26.31
Consensus MFE -23.63
Energy contribution -23.72
Covariance contribution 0.09
Combinations/Pair 1.17
Mean z-score -1.34
Structure conservation index 0.90
SVM decision value 0.21
SVM RNA-class probability 0.634814
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 12455223 92 - 23771897
CGGCAUAUAAAUGGCCAAUUUGCA-------GCAAACUUGGUCGGGAUGGCAGUA---UCGAAUUUGGUCAUUUGGAAUAACCAGAAUGCCGAAUGUGGGAG
((((((.....(((((((..(((.-------((...(((....)))...)).)))---......)))))))(((((.....))))))))))).......... ( -24.30)
>DroSec_CAF1 9649 92 - 1
CGGCAUAUAAAUGGCCAAUUUGCU-------GCAAACUUGGUCGGGAUGGCAGUG---UCGAAUUUGGUCAUUUGGAAUAACCAGAAUGCCGAAUGUGAGAG
((((((.....(((((((..((((-------((...(((....)))...))))))---......)))))))(((((.....))))))))))).......... ( -28.30)
>DroSim_CAF1 9504 92 - 1
CGGCAUAUAAAUGGCCAAUUUGCA-------GCAAACUUGGUCGGGAUGGCAGUG---UCGAAUUUGGUCAUUUGGAAUAACCAGAAUGCCGAAUGUGGGAG
((((((.....(((((((((((((-------((...(((....)))...))..))---.)))).)))))))(((((.....))))))))))).......... ( -25.50)
>DroEre_CAF1 9100 91 - 1
CGGCAUAUAAAUGGCCAAUUUGCA-------GCAA-CCUGGCCGGGAUGGCGGUG---UCGAAUUUGGUCAUUUGGAAUAACCAGAAUGCCGAAUGUGGGAG
((((((.....(((((((((((..-------(((.-((..(((.....)))))))---))))).)))))))(((((.....))))))))))).......... ( -28.80)
>DroYak_CAF1 9402 91 - 1
CGGCAUAUAAAUGGCCAAUUUGCA-------GCAA-CCUGGCCGGGAUGGCAGUG---UCCAAUUUGGUCAUUUGGAAUAACCAGAAUGCCGAAUGUGGGAG
((((((.....(((((((.(((..-------(((.-....(((.....)))..))---).))).)))))))(((((.....))))))))))).......... ( -28.90)
>DroAna_CAF1 9265 100 - 1
CGGCAUAUAAAUGGCCAAUUUAAUGGUUAACGAAAACCUGGUCAGGAUGGUGGUGGCAUCAAAUUUGGUCAUUUGGAAUAACCAGAAUUGCGAAUGUGGG--
(.((((.....(((((((.......((((.((..(.(((....))).)..)).)))).......)))))))(((((.....))))).......)))).).-- ( -22.04)
>consensus
CGGCAUAUAAAUGGCCAAUUUGCA_______GCAAACCUGGUCGGGAUGGCAGUG___UCGAAUUUGGUCAUUUGGAAUAACCAGAAUGCCGAAUGUGGGAG
.(.(((.....((((((..((((........))))...))))))..))).).......(((.(((((((..(((((.....)))))..))))))).)))... (-23.63 = -23.72 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:17:49 2006